Job Description P23917 Confidence 79.63% Date Thu Jan 5 11:40:37 GMT 2012 Rank 158 Aligned Residues 94 % Identity 15% Template c3psfA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) Resolution 2.59 Å

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		2	.	.	.	.	.	.						.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure									.	.	.	.	.																						.	.	.
Query SS confidence									.	.	.	.	.																						.	.	.
Query Sequence		R	I	G	I	D	L	G	.	.	.	.	.	G	T	K	T	E	V	I	A	L	G	D	A	G	E	Q	L	Y	R	H	R	L	.	.	.	P	T	P	R	D	D	Y	R	Q	T	I	E	T	I	A	T	L	V	D	M	A	E	Q	A	T	G	Q	R	G	T	V	G	M	G	I	P	G	S	I	S	P	Y	T	G
Query Conservation									.	.	.	.	.																						.	.	.
Alig confidence									.	.	.	.	.																						.	.	.																							.	.	.	.	.
Template Conservation																																																												.	.	.	.	.
Template Sequence		I	L	S	L	T	C	G	Q	G	R	F	G	A	D	A	I	I	A	V	Y	V	N	R	K	G	D	F	I	R	D	Y	K	I	V	D	N	P	F	D	K	T	N	P	E	K	F	E	D	T	L	D	N	I	I	Q	S	C	Q	.	.	.	.	.	P	N	A	I	G	I	N	G	P	N	P	K	T	Q	K	F	Y
Template Known Secondary structure								T	T			T	T	T	S									T	T	S										S		T	T		S	S																		.	.	.	.	.		S							S	S	T
Template Predicted Secondary structure																																																												.	.	.	.	.
Template SS confidence
		750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.						.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.								.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.
Query Sequence		V	V	K	N	A	N	S	T	W	L	N	G	Q	P	F	D	K	D	L	S	A	R	.	.	.	.	.	.	.	L	Q	R	E	V	R	L	A	N	D	A	N	C	L	A	V	S
Query Conservation																								.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	.	.	.	.	.	.	.	.	.	.	.	.	R	L	Q	E	V	L	H	K	K	Q	I	V	D	S	R	G	H	T	I	P	I	I	Y	V	E	D	E	V	A	I	R	Y	Q
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.									T	T		B		T	T	S		B									T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		825													.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions