Job Description P23917 Confidence 96.63% Date Thu Jan 5 11:40:37 GMT 2012 Rank 116 Aligned Residues 255 % Identity 18% Template c3iucC_ PDB info PDB header:chaperone Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.										20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	G	I	D	L	G	G	T	K	T	E	V	I	A	L	G	D	.	.	.	.	.	.	.	.	.	A	G	E	Q	L	Y	R	H	R	L	P	T	P	R	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	G	I	D	L	G	T	T	Y	S	C	V	G	V	F	K	N	G	R	V	E	I	I	A	N	D	Q	G	N	R	I	T	P	S	Y	V	A	F	T	P	E	G	E	R	L	I	G	D	A	A	K	N	Q	L	T	S	N	P	E	N	T	V	F	D	A	K	R	L	I	G	R	T	W	N	D	P	S	V	Q
Template Known Secondary structure									S	S									T	T								T	T	S		S	S									T	T	S					T					T	T	T	T	T		S	T	T					G	G	G	T	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
																																			36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	Q	T	I	E	T	I	A	T	L	V	D	M	A	E	Q	A	T	G	.	Q	R	G	T	V	G	M	G	I	P	G	S	I	S	P	Y	T	G	V	V	K	N	A	N	S	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																				.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		Q	D	I	K	F	L	P	F	K	V	V	E	K	K	T	K	P	Y	I	Q	V	D	I	G	G	G	Q	T	K	T	F	A	P	E	E	I	S	A	M	V	L	T	K	M	K	E	T	A	E	A	Y	L	G	K	K	V	T	H	A	V	V	T	V	P	A	Y	F	N	D	A	Q	R	Q	.	.	.	.	.	.	.
Template Known Secondary structure					T	T		S	S						T	T									S	T	T																											T	S	B										T	T								.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	N	G	Q	P	F	D	K	D	L	S	A	R	L	Q	R	E	V	R	L	A	N	D	A	N	C	L	A	V	S	E	A	V	D	G	A	A	A	G	A	Q	T	V	F	A	V	I	I	G	T	G	C	G	A	G	V	A	F	N	G	R	A	H	I	G	G	N	G	T	A	G	E	W	G	H	N	P	L	P
Query Conservation
Alig confidence		.	.	.	.	.																											.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																											.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	A	T	K	D	A	G	T	I	A	G	L	N	V	M	R	I	I	N	E	P	T	A	A	A	I	A	.	.	.	Y	G	L	D	K	G	E	K	N	I	L	V	F	D	L	G	G	G	T	F	D	V	S	L	L	T	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.										T																	.	.	.	T	T	T	T													S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.																											.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	M	D	E	D	E	L	R	Y	R	E	E	V	P	C	Y	C	G	K	Q	G	C	I	E	T	F	I	S	G	T	G	F	A	M	D	Y	R	R	L	S	G	H	A	L	K	G	S	E	I	I	R	L	V	E	E	S	D	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	N	G	V	F	E	V	V	A	T	N	G	D	T	H	L	G	G	E	D	F	D	Q	R	V	M	E	H	F	I	K	L	Y	K	K	K	T	G	K	D	V	R	K	D	N	R	A	V	Q	K	L	R	R	E	V	E	K	A	K	R	A	L	S	S	Q	H	Q	A	R	I	E	I	E	S	F	Y	E	G	E
Template Known Secondary structure		.	.	T	T											T	T		S																					S				T	T																				T	T	S	S											T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
												221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	A	E	L	A	L	R	R	Y	E	L	R	L	A	K	S	L	A	H	V	V	N	I	L	D	.	.	.	.	.	P	D	V	I	V	L	G	G	G	M	S	N	V	D	R	L	Y	Q	T	V	G	Q	L	I	K	Q	F	V	F	G	G	E	C	E	T	P	V	R	K	A	K
Query Conservation		.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.
Template Sequence		D	F	S	E	T	L	T	R	A	K	F	E	E	L	N	M	D	L	F	R	S	T	M	K	P	V	Q	K	V	L	E	D	S	D	L	K	K	S	D	I	D	E	I	V	L	V	G	G	S	T	R	I	P	K	I	Q	Q	L	V	K	E	F	F	N	.	.	.	.	.	.	.	.	G	K	E	P	S	R	G	I
Template Known Secondary structure																T						T	T											T	T			G	G	G								S	G	G	G	G												T	T	.	.	.	.	.	.	.	.	T						S	S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380									.	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	D	S	S	G	V	R	G	A	A	W	L	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	P	D	E	A	V	A	Y	G	A	A	V	Q	A
Template Known Secondary structure			T	T	T
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions