Job Description P23917 Confidence 99.08% Date Thu Jan 5 11:40:37 GMT 2012 Rank 54 Aligned Residues 284 % Identity 16% Template c3ifrB_ PDB info PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.										.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.				.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.																								.	.	.	.										.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.																								.	.	.	.										.	.	.
Query Sequence		R	I	G	I	D	L	G	G	T	K	T	E	V	I	A	L	G	D	A	G	E	Q	L	Y	R	H	R	L	P	T	P	.	.	.	.	.	.	.	.	.	R	D	D	Y	R	Q	T	I	E	T	I	A	T	L	V	D	M	A	E	Q	A	T	G	.	.	.	.	Q	R	G	T	V	G	M	G	I	.	.	.	P
Query Conservation																																	.	.	.	.	.	.	.	.	.																								.	.	.	.										.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.																								.	.	.	.										.	.	.
Template Conservation
Template Sequence		V	I	G	L	D	I	G	T	T	S	T	I	A	I	L	V	R	L	P	D	T	V	V	A	V	A	S	R	P	T	T	L	S	S	P	H	P	G	W	A	E	E	D	P	A	Q	W	W	D	N	A	R	A	V	L	A	E	L	K	T	T	A	G	E	S	D	W	R	P	G	G	I	C	V	T	G	X	L	P	A
Template Known Secondary structure									S	S									T	T	T													B		S	S	T	T																									T	G	G	G												S	S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	I	S	P	Y	T	G	V	V	K	N	A	N	S	T	W	L	N	G	Q	P	F	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	L	L	D	D	R	G	A	V	L	R	P	S	I	Q	Q	S	D	G	R	C	G	D	E	V	A	E	L	R	A	E	V	D	S	E	A	F	L	A	R	T	G	N	G	V	T	Q	Q	L	V	T	A	K	L	R	W	I	E	R	H	E	P	A	V	F	G	A	I	A	T	V	C	G	S	Y	D	Y	I	N
Template Known Secondary structure		B					T	T	S		B		S					T	T			T	T											S										S	S		S	S	T	T	S																		T		S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
																																																											91	.	.	.	.	.	.	.	.						100	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	S	A	R	L	Q	R	E	.	.	.	.	.	V	R	L	A	N	D	A	N	C
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Conservation
Template Sequence		X	L	L	T	G	E	R	V	V	D	R	N	W	A	L	E	G	G	F	I	D	L	A	S	G	T	V	E	A	D	L	V	A	L	A	H	I	P	P	S	A	V	P	P	A	H	P	T	H	R	V	L	G	A	V	T	A	E	A	A	A	L	T	G	L	P	T	G	L	P	V	Y	G	G	A	A	D	H	I	A
Template Known Secondary structure																			T				T	T	T	T										T	T	S		G	G	G	S						T	T	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	V	S	E	A	V	D	G	A	A	A	G	A	Q	T	V	F	A	V	I	I	G	T	G	C	G	A	G	V	A	F	N	G	R	A	H	I	G	G	N	G	T	A	G	E	W	G	H	N	P	L	P	W	M	D	E	D	E	L	R	Y	R	E	E	V	P	C	Y	C	G	K	Q	G	C	I	E	T	F	I
Query Conservation
Alig confidence						.	.	.	.	.
Template Conservation						.	.	.	.	.
Template Sequence		S	A	L	A	.	.	.	.	.	A	G	I	T	R	P	G	D	V	L	L	K	F	G	G	A	G	D	I	I	V	A	S	A	T	A	K	S	R	L	Y	L	D	Y	H	L	V	P	G	L	Y	A	P	N	G	C	X	A	A	T	G	S	A	L	N	W	L	A	K	L	L	A	P	E	A	G	E	A	A	H	A
Template Known Secondary structure						.	.	.	.	.	T	T			S	T	T							S	S	S							B	S	S						B			B		S	S	T	T		B							S		S	S											S	T	T		T	T
Template Predicted Secondary structure						.	.	.	.	.
Template SS confidence
		249	250	.	.						.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.													.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.																																.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.																																.
Query Sequence		S	G	T	G	F	A	M	D	Y	R	R	L	S	G	H	A	L	K	G	S	E	I	I	.	.	.	.	.	.	.	.	.	.	.	.	R	L	V	E	E	S	D	P	V	A	E	L	A	L	R	R	Y	E	L	R	L	A	K	S	L	A	H	V	V	N	I	.	L	D	P	D	V	I	V	L	G	G	G	M	S
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.																																.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.																																.
Template Conservation
Template Sequence		Q	L	D	A	L	A	A	E	V	P	A	G	A	D	G	L	V	C	L	P	Y	F	L	G	D	P	F	A	S	G	T	F	T	G	L	S	L	S	H	T	R	G	H	L	W	R	A	L	L	E	A	V	A	L	A	F	R	H	H	V	A	V	L	D	D	I	G	H	A	P	Q	R	F	F	A	S	D	G	G	T
Template Known Secondary structure									T	S		T	T	G	G	G							T	T			T	T							S			T	T																													T										S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	D	R	L	Y	Q	T	V	G	Q	L	I	K	Q	F	V	F	G	G	E	C	E	T	P	V	R	K	A	K	H	G	D	S	S	G	V	R	G	A	A	W	L	W	P
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.											.
Template Conservation																.	.	.	.	.	.	.	.	.											.
Template Sequence		R	S	R	V	W	X	G	I	X	A	D	V	L	Q	.	.	.	.	.	.	.	.	.	R	P	V	Q	L	L	A	N	P	L	.	G	S	A	V	G	A	A	W	V	A	A
Template Known Secondary structure		G													T	.	.	.	.	.	.	.	.	.	S								T	T	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.											.
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.										.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions