Job Description P23917 Confidence 92.39% Date Thu Jan 5 11:40:37 GMT 2012 Rank 139 Aligned Residues 283 % Identity 13% Template c3cqyA_ PDB info PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1 Resolution 2.30 Å

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		1	.	.	.	.	.	.	.			.	10	.	.	.	.	.	.	.	.	.	20	.				.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.																										40	.	.	.	.	.	.	.	.	.	50
Predicted Secondary structure										.	.														.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.														.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	I	G	I	D	L	G	.	.	G	T	K	T	E	V	I	A	L	G	D	A	G	.	.	.	E	Q	L	Y	R	H	R	L	P	T	P	R	D	D	Y	R	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	T	I	A	T	L	V	D	M	A
Query Conservation										.	.														.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.														.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	Y	I	G	L	X	S	G	T	S	X	D	G	V	D	A	V	L	V	D	F	A	G	E	Q	P	Q	L	I	G	T	H	T	E	T	I	P	T	H	L	L	K	G	L	Q	R	L	C	L	P	G	T	D	E	I	N	R	L	G	R	L	D	R	S	V	G	K	L	F	A	L	A	V	N	N	L	L	A	K	T
Template Known Secondary structure										T	T												S	S	S	S																					G	G	G		T	T	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.														.	.
Predicted Secondary structure																															.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	A	T	G	Q	R	G	T	V	G	M	G	I	P	G	S	I	S	P	Y	T	G	V	V	K	N	A	N	.	.	.	S	T	W	L	N	G	Q	P	F	D	K	D	L	S	A	R	L	Q	R	E	V	R	L	A	N	D	A	N	C	L	A	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A
Query Conservation																															.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.									.	.	.																					.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.																																.	.
Template Sequence		K	I	A	K	D	E	I	I	A	I	G	S	H	.	.	.	.	.	.	.	.	G	Q	T	V	R	H	X	P	N	L	E	V	G	F	T	L	Q	I	G	D	P	N	T	I	A	T	E	T	G	I	D	.	.	V	I	A	D	F	R	R	K	D	I	A	L	G	G	Q	G	A	P	L	V	P	A	F	H	Q	Q
Template Known Secondary structure					G	G	G								.	.	.	.	.	.	.	.								T	T	S	S	S							S										S	S		.	.												T	T	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.																																.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.									.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.
Query Sequence		V	D	G	A	A	A	G	A	Q	T	V	F	A	V	I	I	G	T	G	C	G	A	G	V	A	F	N	G	R	A	H	I	G	G	N	G	T	A	G	E	W	G	H	N	P	L	P	W	M	D	E	D	E	L	R	Y	R	E	E	V	P	C	Y	C	G	K	Q	G	C	.	.	.	.	.	I	E	T	F	I	S
Query Conservation																																																																							.	.	.	.	.
Alig confidence				.	.																										.	.																																							.	.	.	.	.
Template Conservation				.	.																										.	.
Template Sequence		T	F	.	.	A	Q	V	G	K	K	R	V	I	L	N	I	G	G	I	A	N	I	T	Y	L	P	G	N	S	.	.	E	E	V	L	G	F	D	T	G	P	G	N	T	L	I	D	A	W	V	Q	Q	V	K	N	E	S	Y	D	K	N	G	A	W	A	A	S	G	K	T	D	P	Q	L	L	A	Q	L	L	S
Template Known Secondary structure				.	.			T	T									S	S									S	S	S	.	.	S										S	S														S	S		G	G	G						S												T
Template Predicted Secondary structure				.	.																										.	.
Template SS confidence
		155	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																											.	.																														.
Query SS confidence																											.	.																														.
Query Sequence		G	T	G	F	A	M	D	Y	R	R	L	S	G	H	A	L	K	G	S	E	I	I	R	L	V	.	.	E	E	S	D	P	V	A	E	L	A	L	R	R	Y	E	L	R	L	A	K	S	L	A	H	V	V	N	I	L	.	D	P	D	V	I	V	L	G	G	G	M	S	N	V	D	R	L	Y	Q	T	V	G	Q
Query Conservation																											.	.																														.
Alig confidence																											.	.																														.
Template Conservation
Template Sequence		H	P	Y	F	S	L	A	Y	P	K	S	T	G	R	E	L	F	N	Q	A	W	L	E	Q	Q	L	S	A	F	N	Q	L	N	E	E	D	I	Q	S	T	L	L	D	L	T	C	H	S	I	A	Q	D	I	L	K	L	A	Q	E	G	E	L	F	V	C	G	G	G	A	F	N	A	E	L	X	Q	R	L	A	A
Template Known Secondary structure			G	G	G	G	S		S	S					S	S	S	S	S								T	T	T		T	T	S																										S	S							S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	K	Q	F	V	F	G	G	E	C	E	T	P	V	R	K	A	K	H	G	D	S	S	G	V	R	G	A	A	W	L	W	P	Q
Query Conservation
Alig confidence																		.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		L	L	P	G	Y	R	I	D	T	T	S	A	L	G	V	D	.	.	.	.	P	K	W	A	E	G	I	A	F	A	W	L	A	X	R
Template Known Secondary structure				T	T						G	G	G	G	T			.	.	.	.	T	T	T
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions