Job Description P23917 Confidence 100.00% Date Thu Jan 5 11:40:37 GMT 2012 Rank 3 Aligned Residues 291 % Identity 20% Template c1z05A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.
Query SS confidence																																																								.	.	.	.
Query Sequence		R	I	G	I	D	L	G	G	T	K	T	E	V	I	A	L	G	D	A	G	E	Q	L	Y	R	H	R	L	P	T	P	R	D	D	Y	R	Q	T	I	E	T	I	A	T	L	V	D	M	A	E	Q	A	T	G	.	.	.	.	Q	R	G	T	V	G	M	G	I	P	G	S	I	S	P	Y	T	G	V	V	K	N
Query Conservation																																																								.	.	.	.
Alig confidence																																																								.	.	.	.
Template Conservation
Template Sequence		F	L	S	M	R	L	G	R	G	Y	L	T	I	A	L	H	E	L	G	G	E	V	L	I	D	T	K	I	D	I	H	E	I	D	Q	D	D	V	L	A	R	L	L	F	E	I	E	E	F	F	Q	T	Y	A	A	Q	L	D	R	V	T	S	I	A	I	T	L	P	G	L	V	N	S	E	Q	G	I	V	L	Q
Template Known Secondary structure									T	T									T	T	S														B																			T	T	T	T												S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	S	T	W	L	N	G	Q	P	F	D	K	D	L	S	A	R	L	Q	R	E	V	R	L	A	N	D	A	N	C	L	A	V	S	E	A	V	D	G	A	A	A	G	A	Q	T	V	F	A	V	I	I	G	T	G	C	G	A	G	V	A	F	N	G	R	A	H	I	G	G	N	G	T	A	G	E	W	G	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	P	H	Y	N	V	K	N	L	A	L	G	P	E	I	Y	K	A	T	G	L	P	V	F	V	A	N	D	T	R	A	W	A	L	A	E	K	L	F	G	H	S	Q	D	V	D	N	S	V	L	I	S	I	H	H	G	L	G	A	G	I	V	L	D	G	R	V	L	Q	G	R	H	G	N	I	G	E	L	G	H
Template Known Secondary structure			S	S	S	B		S	S	B												S																			S	T	T	T	T		S	S							S	S	S								T	T					T	T	T	T		T	T	B		T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.											.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.
Query Sequence		N	P	L	P	W	M	D	E	D	E	L	R	Y	R	E	E	V	P	C	Y	C	G	K	Q	G	C	I	E	T	F	I	S	G	T	G	F	A	M	D	Y	R	.	.	.	.	.	.	.	.	.	.	R	L	S	G	H	A	L	K	G	S	E	I	I	R	L	V	E	E	S	D	P	V	A	E	L	A	L	R	R
Query Conservation																																											.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.
Template Sequence		I	Q	I	D	P	.	.	.	.	.	.	.	.	.	Q	G	K	R	C	H	C	G	N	Y	G	C	L	E	T	V	A	S	S	Q	A	I	R	D	Q	V	T	A	R	I	Q	A	G	E	P	S	C	L	A	T	V	E	E	I	S	I	E	D	I	C	A	A	A	A	D	G	D	P	L	A	V	D	V	I	Q	Q
Template Known Secondary structure		S	B			T	.	.	.	.	.	.	.	.	.	T			B		T	T	S		B	S	B	T					S														T	T				T	T	T	T		S	S												T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250										.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																															.																							.
Query SS confidence																															.																							.
Query Sequence		Y	E	L	R	L	A	K	S	L	A	H	V	V	N	I	L	D	P	D	V	I	V	L	G	G	G	M	S	N	.	V	D	R	L	Y	Q	T	V	G	Q	L	I	K	Q	F	V	F	G	G	E	C	E	.	T	P	V	R	K	A	K	H	G	D	S	S	G	V	R	G	A	A	W	L	W	P	Q
Query Conservation																															.																							.
Alig confidence																															.																							.
Template Conservation
Template Sequence		L	G	R	Y	L	G	A	A	I	A	I	V	I	N	L	F	N	P	E	K	I	L	I	G	G	V	I	N	Q	A	K	S	I	L	Y	P	S	I	E	Q	C	I	R	E	Q	S	L	P	V	Y	H	Q	D	L	K	L	V	E	S	R	F	Y	K	Q	A	T	M	P	G	A	A	L	I	K	Q	A
Template Known Secondary structure																				S						S	G	G	G	G	G																S						T	T							S		S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions