Phyre 2 alignment of P23917 with c1jcgA

Job Description P23917
Confidence 97.98% Date Thu Jan 5 11:40:37 GMT 2012

Rank 97 Aligned Residues 266

% Identity 18% Template c1jcgA_

PDB info PDB header:structural protein Chain: A: PDB Molecule:rod shape-determining protein mreb; PDBTitle: mreb from thermotoga maritima, amppnp

Resolution 3.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																																			.	.	.	.	40	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	M	R	I	G	I	D	L	G	G	T	K	T	E	V	I	A	L	G	D	A	G	E	Q	L	Y	R	H	R	L	P	T	P	R	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	Q	T	I	E	T	I	A	T	L
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	D	I	G	I	D	L	G	T	A	N	T	L	V	F	L	R	G	K	G	I	V	V	N	E	P	S	V	I	A	I	D	S	T	T	G	E	I	L	K	V	G	L	E	A	K	N	M	I	G	K	T	P	A	T	I	K	A	I	R	P	M	R	D	G	V	I	A	D	Y	T	V	A	L	V	M	L	R	Y	F
Template Known Secondary structure									S	S							T	T	T								S						T	T	T							S					T	T	T	T	S			T	T									T	T			S	S
Template Predicted Secondary structure
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	47	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence	V	D	M	A	E	Q	A	T	G	.	Q	R	G	T	V	G	M	G	I	P	G	S	I	S	P	Y	T	G	V	V	K	N	A	N	S	T	W	L	N	G	Q	P	F	D	K	D	L	S	A	R	L	Q	R	E	V	R	L	A	N	D	A	N	C	L	A	V	S	E	A	V	D	G	A	A	A	G	A	Q	T	V
Query Conservation										.
Alig confidence										.																					.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Sequence	I	N	K	A	K	G	G	M	N	L	F	K	P	R	V	V	I	G	V	P	I	G	I	T	D	V	E	R	R	A	.	.	.	.	.	.	.	.	.	.	.	.	I	L	D	A	G	L	E	A	G	A	S	K	V	F	L	I	E	E	P	M	A	A	A	I	G	S	N	L	N	.	.	V	E	E	P	S	G	N
Template Known Secondary structure						T	S			S	S										S	S									.	.	.	.	.	.	.	.	.	.	.	.							T	T	T		S														T	T	T			.	.	S	S	S	S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.													.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.

	126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	A	V	I	I	G	T	G	C	G	A	G	V	A	F	N	G	R	A	H	I	G	G	N	G	T	A	G	E	W	G	H	N	P	L	P	W	M	D	E	D	E	L	R	Y	R	E	E	V	P	C	Y	C	G	K	Q	G	C	I	E	T	F	I	S	G	T	G	F	A	M	D	Y	R	R	L	S	G	H	A	L
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.
Template Sequence	M	V	V	D	I	G	G	G	T	T	E	V	A	V	I	S	L	G	.	.	.	.	.	.	.	.	.	S	I	V	T	W	E	S	I	R	I	A	G	D	E	M	D	E	A	I	V	Q	Y	V	R	E	T	Y	R	V	A	I	G	E	R	T	A	E	R	V	K	I	E	I	G	N	V	F	P	S	K	E	N	D
Template Known Secondary structure							S	S									T	T	.	.	.	.	.	.	.	.	.									S		S																																		B		S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Template SS confidence
	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.										.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

	206																						.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	E	I	I	R	L	V	E	E	S	D	P	V	A	E	L	A	L	R	R	Y	E	L	R	L	A	K	S	L	A	H	V	V	N	I	L	D	P	D	V	I	V	L	G	G	G	M	S	N	V	D	R	L	Y	Q	T	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation																																.	.	.
Template Sequence	E	L	E	T	T	V	S	G	I	D	L	S	T	G	L	P	R	K	L	T	L	K	G	G	E	V	R	E	A	L	R	.	.	.	S	V	V	V	A	I	V	E	S	V	R	T	T	L	E	K	T	P	P	E	L	V	S	D	I	I	E	R	G	I	F	L	T	G	G	G	S	L	L	R	G	L	D	T	L	L
Template Known Secondary structure	T										T	T	T	T																		.	.	.																T	S																	S	G	G	G		S	B	T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
	221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

	265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	Q	L	I	K	Q	F	V	F	G	G	E	C	E	T	P	V	R	K	A	K	H	G	D	S	S	G	V	R	G	A	A	W	L	W	P	Q
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.
Template Sequence	Q	K	E	T	.	.	.	.	.	.	.	.	.	G	I	S	V	I	R	S	E	E	P	L	T	A	V	A	K	G	A	G	M	V	L	D	K
Template Known Secondary structure					.	.	.	.	.	.	.	.	.		S						S	S	S	T	T									T	T	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Template SS confidence
	298	.	300	.										.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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