Job Description P19318 Confidence 14.47% Date Thu Jan 5 11:37:15 GMT 2012 Rank 80 Aligned Residues 64 % Identity 19% Template c3eg9B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin Resolution 3.00 Å

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		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.						.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.
Query SS confidence																																					.	.	.	.	.
Query Sequence		P	R	L	C	E	H	C	L	N	P	S	C	V	A	T	C	P	S	G	A	I	Y	K	R	E	E	D	G	I	V	L	I	D	Q	D	.	.	.	.	.	K	C	R	G	W	R	L	C	I	S	G	C	P	Y	K	K	I	Y	F	N	W	K	S	G	K	S	E	K	C	I	F	C	Y	P	R
Query Conservation																																					.	.	.	.	.
Alig confidence																								.													.	.	.	.	.								.	.										.	.	.
Template Conservation																								.																									.	.										.	.	.
Template Sequence		S	D	M	A	K	Q	A	Q	I	P	L	A	A	V	I	K	P	F	A	T	I	P	.	S	N	E	S	P	L	Y	L	V	N	H	G	E	S	G	P	V	R	C	N	R	C	K	A	.	.	Y	M	C	P	F	M	Q	F	I	.	.	.	E	G	G	R	R	Y	Q	C	G	F	C	N	C	V
Template Known Secondary structure																		T	T					.	T	T	S									T	T	T		S		B		T	T	T			.	.	B	S		T	T					.	.	.	G	G	G	T					T	T	T
Template Predicted Secondary structure																								.																									.	.										.	.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.			370	.	.	.	.	.	.	.	.				.	380	.	.	.	.	.	.	.	.	.	390	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions