Job Description P19318 Confidence 100.00% Date Thu Jan 5 11:37:15 GMT 2012 Rank 9 Aligned Residues 255 % Identity 13% Template c1gx7A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase Resolution UNK

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		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	Y	L	P	R	L	C	E	H	C	L	N	P	S	C	V	A	T	C	P	S	G	A	I	Y	K	R	E	E	D	G	I	V	L	I	D	Q	D	K	C	R	G	W	R	L	C	I	S	G	C	P	Y	K	K	I	Y	F	N	W	K	S	G	K	S	E	K	C	I	F	C	Y	P	R	I	E	S	G	Q	P
Query Conservation
Alig confidence															.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Q	I	D	E	A	K	C	I	G	C	D	T	.	.	C	S	Q	Y	C	P	T	A	A	I	F	G	E	M	G	E	P	H	S	I	P	H	I	E	A	C	I	N	C	G	Q	C	L	T	H	C	P	E	N	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	S			S			S	.	.	G	G	G	G		T	T	S			B			T	T	S			B				T	T	T	S		S			S	S	S	T	T	S	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.										.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.
Query Sequence		T	V	C	S	E	T	C	V	G	R	I	R	Y	L	G	V	L	L	Y	D	A	D	R	I	E	E	A	A	S	T	E	R	E	V	D	L	Y	E	R	Q	C	E	V	F	L	D	.	.	.	.	.	.	.	.	.	P	H	D	P	S	V	I	E	E	A	L	K	Q	G	I	P	Q	N	V	I	D	A	A	Q	R
Query Conservation																																																.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	A	Q	S	W	V	P	E	V	E	K	K	L	K	D	G	K	V	K	C	I	A	M	P	A	P	A	V	R	Y	A	L	G	D	A	F	G	M	P	V	G	S	V	T	T	G	K	M	L	A	A	L	Q	K	L	G	F	A	H	C	W	D	T	E	F	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.			S													T	T	T	S															G	G	G	G	T			S	S	S		T											T	T				B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.				350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.					.	.	.	.	.
Predicted Secondary structure																									.	.	.																																														.	.	.	.
Query SS confidence																									.	.	.																																														.	.	.	.
Query Sequence		S	P	V	Y	K	M	A	M	D	W	K	L	A	L	P	L	H	P	E	Y	R	T	L	.	.	.	P	M	V	W	Y	V	P	P	L	S	P	I	Q	S	Y	A	D	A	G	G	L	P	K	S	E	G	V	L	P	A	I	E	S	L	R	I	P	V	Q	Y	L	A	N	M	L	.	.	.	.	S	A	G	D	T
Query Conservation																									.	.	.																																														.	.	.	.
Alig confidence					.	.																			.	.	.									.	.																																				.	.	.	.
Template Conservation					.	.																														.	.
Template Sequence		A	D	V	.	.	T	I	W	E	E	G	S	E	F	V	E	R	L	T	K	K	S	D	M	P	L	P	Q	F	T	S	C	C	P	.	.	G	W	Q	K	Y	A	E	T	Y	Y	P	E	L	L	P	H	F	S	T	C	K	S	P	I	G	M	N	G	A	L	A	K	T	Y	G	A	E	R	M	K	Y	D	P	K
Template Known Secondary structure					.	.														T	T	S	S				S	S								.	.											G	G	G	G	G	G	S		S													T	T						T	T			G	G
Template Predicted Secondary structure					.	.																														.	.
Template SS confidence
		149	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.				.	470	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.
Query SS confidence																																																																							.	.	.
Query Sequence		G	P	V	L	R	A	L	K	R	M	M	A	M	R	H	Y	M	R	S	Q	T	V	E	G	V	T	D	T	R	A	I	D	E	V	G	L	S	V	A	Q	V	E	E	M	Y	R	Y	L	A	I	A	N	Y	E	D	R	F	V	I	P	T	S	H	R	E	M	A	G	D	.	.	.	A	F	A	E	R	N	G	C
Query Conservation																																																																							.	.	.
Alig confidence																		.	.																												.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																		.	.																												.	.	.	.	.	.	.	.
Template Sequence		Q	V	Y	T	V	S	I	M	P	C	I	A	K	K	Y	E	.	.	G	L	R	P	E	L	K	S	S	G	M	R	D	I	D	A	T	L	T	T	R	E	L	A	Y	M	I	.	.	.	.	.	.	.	.	K	K	A	G	I	D	F	A	K	L	P	D	G	K	R	D	S	L	M	G	E	S	T	G	G	A	T
Template Known Secondary structure		G								S		T						.	.		T	S	T	T	S		B	T	T	B		S															.	.	.	.	.	.	.	.			T	T			G	G	G								T	T	S					S	T	T	S
Template Predicted Secondary structure																		.	.																												.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.									.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		477	.	.	480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	T	F	G	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F	G	V	T	G	G
Template Known Secondary structure			S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions