 |
Job Description | P23524 | Confidence | 24.46% | Date | Thu Jan 5 11:39:34 GMT 2012 |
Rank | 181 | Aligned Residues | 74 |
% Identity | 20% | Template | c3uagA_ |
PDB info |
PDB header:ligase | Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d- |
PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
|
Resolution | 1.77 Å |
|
 |
  |   |
124 | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
. | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | |
|
|
. | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |
|
| . | . | . |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
Query Sequence |   |
S | G | A | T | N | I | I | I | G | I | G | G | S | A | T | N | D | G | G | A | G | M | V | Q | A | L | G | A | K | L | C | D | A | N | G | N | E | I | G | F | G | G | G | S | L | N | T | L | N | D | I | D | I | . |
S | G | L | D | P | R | L | K | D | C | V | I | R | V | A | C | D | V | . |
. |
. |
T | N | P | L | V |
Query Conservation |   |
  |
|   |   |   |
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|
|   |
|
|
|   |   |
|   |
|   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |
|
|   | . |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |
|
| . | . | . |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |
|   |
|   |
|   |
|
|   |
| . |   | . |
|   |   |
|   |   |   |
|   |   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|   |
|   |   |   |   |
|   |
|
Template Sequence |   |
Q | G | K | N | V | V | I | I | G | L | G | L | T | G | L | S | . |
C | . |
V | D | F | F | L | A | R | G | V | T | P | R | V | M | D | T | R | M | T | P | P | G | L | D | K | L | P | E | A | V | E | R | H | T | G | S | L | N | D | E | W | L | M | A | A | D | L | I | V | A | S | P | G | I | A | L | A | H | P | S | L |
Template Known Secondary structure |   |
T | T |
|
|  |  |  |  |
|
| S |  |  |  |  |  | . |  | . |  |  |  |  |  | T | T | T |
|
|
|  |  |  |  | S | S | S | S |
| T | T | G | G | G | S |
| T | T | S |
|  |  |  | S | S |
|
|  |  |  |  | T | T |
| S |  |  |  |  |
| T | T | S |
| T | T | S |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  | . |  | . |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | |
20 | |
. | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|