Job Description P77668 Confidence 99.83% Date Thu Jan 5 12:31:30 GMT 2012 Rank 10 Aligned Residues 124 % Identity 23% Template c2wpnA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough Resolution 2.04 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60																							.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Query Sequence		A	Y	V	Y	R	V	D	C	G	G	C	N	A	C	E	I	E	I	F	A	A	I	T	P	V	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	R	F	G	I	K	V	V	S	S	P	R	H	A	D	I	L	L	F	T	G	A	V	T	R	A	M	R	.	.
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation
Template Sequence		P	P	V	F	W	L	Q	G	Q	G	C	T	G	C	S	V	T	L	L	N	S	V	H	P	S	I	A	D	V	L	L	K	V	I	S	L	E	F	H	P	T	V	M	A	W	E	G	E	H	A	I	E	H	M	R	K	V	A	E	K	F	K	G	K	F	F	L	V	I	E	G	S	V	P	V	E	A	D	G	K
Template Known Secondary structure									S	B			S								T				T	T								T							T	T	T		S																	T	T	T	T							S	B				T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
														90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																														.	.																		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																														.	.																		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	M	P	A	L	R	A	Y	E	S	A	P	D	H	K	I	C	V	S	Y	G	A	C	G	V	G	G	G	I	F	.	.	H	D	L	Y	S	V	W	G	G	S	D	T	I	V	P	I	D	.	.	.	.	.	.	V	W	I	P	G	C	P	P	T	P	A	A	T	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																														.	.																		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																														.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		Y	C	I	I	G	E	A	N	H	H	E	I	S	M	V	D	A	L	K	E	F	G	P	N	A	A	A	V	L	A	V	G	T	C	A	A	Y	G	G	I	P	A	A	E	G	S	E	T	G	A	T	A	V	S	K	F	L	G	D	N	G	I	K	T	P	V	V	N	I	P	G	C	P	P	H	P	D	W	I	V
Template Known Secondary structure		T							T	T													G	G	G															T	G	G	G	S	T	T			S												T	T										S	S	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	F	A	V	A	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	T	V	V	L	A	L	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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