Job Description P0AG90 Confidence 99.95% Date Thu Jan 5 11:28:27 GMT 2012 Rank 5 Aligned Residues 194 % Identity 15% Template d1iwga7 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	N	N	P	N	E	A	R	Q	L	S	L	L	L	R	A	G	A	L	I	A	P	I	Q	I	V	E	E	R	T	I	G	P	T	L	G	M	Q	N	I	E	Q	G	L	E	A	C	L	A	G	L	L	V	S	I	L	F	M	I	I	F	Y	K	K	F	G	L	I	A	T	S	A	L	I	A	N	L	I	L
Query Conservation
Alig confidence																																					.	.	.
Template Conservation																																					.	.	.
Template Sequence		D	R	P	I	F	A	W	V	I	A	I	I	I	M	L	A	G	G	L	A	I	L	K	L	P	V	A	Q	Y	P	T	P	F	V	K	.	.	.	I	S	I	H	E	V	V	K	T	L	V	E	A	I	I	L	V	F	L	V	M	Y	L	F	L	Q	N	F	R	A	T	L	I	P	T	I	A	V	P	V	V	L
Template Known Secondary structure																							T	T	S				S	S							.	.	.																							T	T				T	T	T	T	T
Template Predicted Secondary structure																																					.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		490	.	.	.	.	.	.		.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Predicted Secondary structure									.																																	.
Query SS confidence									.																																	.
Query Sequence		I	V	G	I	M	S	L	.	L	P	G	A	T	L	S	M	P	G	I	A	G	I	V	L	T	L	A	V	A	V	D	A	N	V	L	I	N	E	R	I	.	K	E	E	L	S	N	G	R	T	V	Q	Q	A	I	D	E	G	Y	R	G	A	F	S	S	I	F	D	A	N	I	T	T	L	I	K	V	I	I	L
Query Conservation									.																																	.
Alig confidence									.																																	.
Template Conservation
Template Sequence		L	G	T	F	A	V	L	A	A	F	G	F	S	I	N	T	L	T	M	F	G	M	V	L	A	I	G	L	L	V	D	D	A	I	V	V	V	E	N	V	E	R	V	M	A	E	E	G	L	P	P	K	E	A	T	R	K	S	M	G	Q	I	Q	G	A	L	V	G	I	A	M	V	L	S	A	V	F	V	P	M
Template Known Secondary structure										T	T	T			S																																	T	S			S							G	G	G	T																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
		568	.	570	.	.	.	.				.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		Y	A	V	G	T	G	A	.	.	.	I	K	G	F	A	I	T	T	G	I	G	V	A	T	S	M	F	T	A	I	V	G	T	R	A	I	V	N	L	L	Y	G
Query Conservation									.	.	.
Alig confidence									.	.	.
Template Conservation
Template Sequence		A	F	F	G	G	S	T	G	A	I	Y	R	Q	F	S	I	T	I	V	S	A	M	A	L	S	V	L	V	A	L	I	L	T	P	A	L	C	A	T	M	L	K
Template Known Secondary structure		T				T	T	S																						T	T	T									S
Template Predicted Secondary structure
Template SS confidence
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions