Job Description P0AG90 Confidence 100.00% Date Thu Jan 5 11:28:27 GMT 2012 Rank 3 Aligned Residues 419 % Identity 36% Template c3aqpB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus Resolution 3.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		G	D	K	Y	V	V	A	L	N	L	A	P	A	T	P	R	W	L	A	A	I	H	A	.	.	.	.	.	E	P	M	K	L	G	L	D	L	R	G	G	V	H	F	L	M	E	V	D	M	D	T	A	L	G	K	L	Q	E	Q	N	I	D	S	L	R	S	D	L	R	E	K	G	I	P	Y	T	T	V	R	K
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	N	L	T	S	L	F	L	L	G	V	F	L	L	A	L	L	F	V	W	K	P	W	A	P	E	E	P	K	V	R	L	G	L	D	L	K	G	G	L	R	I	V	L	E	A	D	V	E	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																								S	S		S					S				S	T	T	T											S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	N	Y	G	L	S	I	T	F	R	D	A	K	A	R	D	E	A	I	A	Y	L	S	K	R	H	P	D	L	V	I	S	S	Q	G	S	N	Q	L	R	A	V	M	S	D	A	R	L	S	E	A	R	E	Y	A	V	Q	Q	N	I	N	I	L	R	N	R	V	N	Q	L	G	V	A	E	P	V	V	Q	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	D	D	L	E	K	A	R	T	V	L	E	N	R	I	N	A	L	G	V	A	E	P	L	I	Q	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																						55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.						.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																.	.																																																		.	.	.	.	.
Query SS confidence																.	.																																																		.	.	.	.	.
Query Sequence		Q	G	A	D	R	I	V	V	E	L	P	G	I	Q	.	.	D	T	A	R	A	K	E	I	L	G	A	T	A	T	L	E	F	R	L	V	N	T	N	V	D	Q	A	A	A	A	S	G	R	V	P	G	D	S	E	V	K	Q	T	R	E	G	Q	P	V	.	.	.	.	.	V	L	Y	K	R	V	I	L	T	G
Query Conservation																.	.																																																		.	.	.	.	.
Alig confidence																.	.																																																		.	.	.	.	.
Template Conservation
Template Sequence		Q	G	Q	K	R	I	V	V	E	L	P	G	L	S	Q	A	D	Q	D	R	A	L	K	L	I	G	Q	R	A	V	L	E	F	R	I	V	K	E	G	A	T	G	T	T	V	A	Q	I	N	Q	A	L	R	E	N	P	R	L	N	R	E	E	L	E	K	D	L	I	K	P	E	D	L	G	P	P	L	L	T	G
Template Known Secondary structure			T	T	T																							S													T	T		B												S	S											B				S	S					S			S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		D	H	I	T	D	S	T	S	S	Q	D	E	Y	N	Q	P	Q	V	N	I	S	L	D	S	A	G	G	N	I	M	S	N	F	T	K	D	N	I	G	K	P	M	A	T	L	F	V	E	Y	K	D	S	G	K	K	D	A	N	G	R	A	V	L	V	K	Q	E	E	V	I	N	I	A	N	I	Q	S	R	L	.
Query Conservation																																																																																	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	L	A	D	A	R	A	V	F	D	Q	F	G	R	P	Q	V	S	L	T	F	T	P	E	G	A	K	K	F	E	E	V	T	R	Q	N	I	G	K	R	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	L	D	G	R	V	Y	T	A	P	V	I	R	Q	A	I	T
Template Known Secondary structure													T	T	T																							T	T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T									S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.																				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	S	F	R	I	T	G	I	N	N	P	N	E	A	R	Q	L	S	L	L	L	R	A	G	A	L	I	A	P	I	Q	I	V	E	E	R	T	I	G	P	T	L	G	M	Q	N	I	E	Q	G	L	E	A	C	L	A	G	L	L	V	S	I	L	F	M	I	I	F	Y	K	K	F	G	L	I	A	T	S	A
Query Conservation
Alig confidence																																																																									.
Template Conservation																																																																									.
Template Sequence		G	G	Q	A	V	I	E	G	L	S	S	V	E	E	A	S	E	I	A	L	V	L	R	S	G	S	L	P	V	P	L	K	V	A	E	I	R	A	I	G	P	T	L	G	Q	D	A	I	Q	A	G	I	R	S	A	L	I	G	T	L	A	I	F	L	L	I	F	A	Y	Y	G	.	P	H	L	G	L	V	A	S
Template Known Secondary structure		S	S										S	S														S																																												T	.
Template Predicted Secondary structure																																																																									.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.
		483	.	.	.	.	.	.	490	.	.	.	.	.	.		.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		L	I	A	N	L	I	L	I	V	G	I	M	S	L	.	L	P	G	A	T	L	S	M	P	G	I	A	G	I	V	L	T	L	A	V	A	V	D	A	N	V	L	I	N	E	R	I	K	E	E	L	S	N	G	R	T	V	Q	Q	A	I	D	E	G	Y	R	G	A	F	S	S	I	F	D	A	N	I	T	T	L
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		L	G	L	L	Y	T	S	A	L	I	L	G	L	L	S	G	L	G	A	T	L	T	L	P	G	I	A	G	L	V	L	T	L	G	A	A	V	D	G	N	V	L	S	F	E	R	I	K	E	E	L	R	A	G	K	K	L	R	Q	A	I	P	E	G	F	R	H	S	T	L	T	I	M	D	V	N	I	A	H	L
Template Known Secondary structure																																																						T	T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	V	I	I	L	Y	A	V	G	T	G	A	I	K	G	F	A	I	T	T	G	I	G	V	A	T	S	M	F	T	A	I	V	G	T	R	A	I	V	N	L	L	Y	G	G	K	R	V	K	K	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	A	A	A	L	Y	Q	Y	A	T	G	P	V	R	G	F	A	V	I	L	A	I	G	V	V	A	S	V	F	S	N	L	V	F	S	R	H	L	L	E	R	L	A	D	R	G	E	I	R	P	P	M
Template Known Secondary structure										T			T																																			T
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.