Job Description P0AG90 Confidence 99.75% Date Thu Jan 5 11:28:27 GMT 2012 Rank 6 Aligned Residues 207 % Identity 34% Template c3aqoD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: structure and function of a membrane component secdf that enhances2 protein export Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		D	A	R	L	S	E	A	R	E	Y	A	V	Q	Q	N	I	N	I	L	R	N	R	V	N	Q	L	G	V	A	E	P	V	V	Q	R	Q	G	A	D	R	I	V	V	E	L	P	G	I	Q	.	.	D	T	A	R	A	K	E	I	L	G	A	T	A	T	L	E	F	R	L	V	N	T	N	V	D	Q	A	A	A
Query Conservation																																																			.	.
Alig confidence																																																			.	.
Template Conservation
Template Sequence		E	A	D	V	E	N	P	T	L	D	D	L	E	K	A	R	T	V	L	E	N	R	I	N	A	L	G	V	A	E	P	L	I	Q	I	Q	G	Q	K	R	I	V	V	E	L	P	G	L	S	Q	A	D	Q	D	R	A	L	K	L	I	G	Q	R	A	V	L	E	F	R	I	V	K	E	G	A	T	G	T	T	V
Template Known Secondary structure					S	S	S																				T	T		S	S							T	T	T																						T										B		T	T				B
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.						.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.
Query SS confidence																					.	.	.	.	.
Query Sequence		A	S	G	R	V	P	G	D	S	E	V	K	Q	T	R	E	G	Q	P	.	.	.	.	.	V	V	L	Y	K	R	V	I	L	T	G	D	H	I	T	D	S	T	S	S	Q	D	E	Y	N	Q	P	Q	V	N	I	S	L	D	S	A	G	G	N	I	M	S	N	F	T	K	D	N	I	G	K	P	M	A	T	L
Query Conservation																					.	.	.	.	.
Alig confidence																					.	.	.	.	.																																																				.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		A	Q	I	N	Q	A	L	R	E	N	P	R	L	N	R	E	E	L	E	K	D	L	I	K	P	E	D	L	G	P	P	L	L	T	G	A	D	L	A	D	A	R	A	V	F	D	Q	F	G	R	P	Q	V	S	L	T	F	T	P	E	G	A	K	K	F	E	E	V	T	R	Q	N	I	G	K	.	.	.	.	.
Template Known Secondary structure												T	T	S							T	T	B			G	G	G	B				S			G	G	G										T	T	S																								T	T	S	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		F	V	E	Y	K	D	S	G	K	K	D	A	N	G	R	A	V	L	V	K	Q	E	E	V	I	N	I	A	N	I	Q	S	R	L	.	G	N	S	F	R	I	T	G	I	N	N	P	N	E	A	R	Q	L	S	L	L	L	R	A	G	A	L	I	A	P	I	Q	I	V	E	E	R	T	I
Query Conservation																																				.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	A	I	V	L	D	G	R	V	Y	T	A	P	V	I	R	Q	A	I	T	G	G	Q	A	V	I	E	G	L	S	S	V	E	E	A	S	E	I	A	L	V	L	R	S	G	S	L	P	V	P	L	K	V	A	E	I	R	A	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	B						T	T							B			S				S	S								S																		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions