Job Description P0AG90 Confidence 4.68% Date Thu Jan 5 11:28:27 GMT 2012 Rank 25 Aligned Residues 47 % Identity 26% Template c2vakF_ PDB info PDB header:viral protein Chain: F: PDB Molecule:sigma a; PDBTitle: crystal structure of the avian reovirus inner capsid2 protein sigmaa Resolution 2.34 Å

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		2	.	.	.	.	.	.	.										10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.																.	.	.	.	.	40	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	R	Y	P	L	W	K	.	.	.	.	.	.	.	.	.	Y	V	M	L	I	V	V	I	V	I	G	L	L	Y	A	L	P	N	L	F	G	E	D	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	I	T	G	A	R	G	V	A	A	S	E	Q
Query Conservation										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	N	Y	P	R	W	A	N	R	R	R	E	L	Q	S	K	Y	P	L	L	L	R	S	T	L	L	S	A	M	R	A	G	P	V	L	Y	V	E	T	W	P	N	M	I	S	G	R	L	A	D	W	F	M	S	Q	Y	G	N	N	F	V	D	M	C	A	R	L	T	Q	S
Template Known Secondary structure		G	G	G	S																										S	S	S	S									T	T		S											T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions