Job Description P0AG90 Confidence 100.00% Date Thu Jan 5 11:28:27 GMT 2012 Rank 2 Aligned Residues 553 % Identity 13% Template c1oy8A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump Resolution 3.63 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		L	I	V	V	I	V	I	G	L	L	Y	A	L	P	N	L	F	G	E	D	P	A	V	Q	I	T	G	A	R	G	V	A	A	S	E	Q	T	L	I	Q	V	Q	K	T	L	Q	E	E	K	I	T	A	K	S	V	A	L	E	E	G	A	I	L	A	R	F	D	S	T	D	T	Q	L	R	.	.	A	R	E	A
Query Conservation																																																																												.	.
Alig confidence																																																													.	.	.	.	.											.	.
Template Conservation																																																													.	.	.	.	.
Template Sequence		L	V	G	I	A	M	V	L	S	A	V	F	V	P	M	A	F	F	G	G	S	T	G	A	I	Y	R	Q	F	S	I	T	I	V	S	A	M	A	L	S	V	L	V	A	L	I	L	T	P	A	L	C	A	T	M	L	K	F	G	.	.	.	.	.	W	F	N	R	M	F	E	K	S	T	H	H	Y	T	D	S
Template Known Secondary structure										T	T	T	S	T	T	T	T				G	G	G																						T	T	T									S					.	.	.	.	.											T
Template Predicted Secondary structure																																																													.	.	.	.	.
Template SS confidence
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500						.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	G	V	M	G	D	K	Y	V	V	A	L	N	L	A	P	A	T	P	R	W	L	A	A	I	H	A	E	P	M	K	L	G	L	D	L	R	G	G	V	H	F	L	M	E	V	D	M	D	T	A	L	G	K	L	Q	E	Q	N	I	D	S	L	R	S	D	L	R	E	K	G	I	P	Y	T	T	V	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	G	I	L	R	S	T	G	R	Y	L	V	L	Y	L	I	I	V	V	G	M	A	Y	L	F	V	R	L	P	S	S	F	L	P	D	E	D	Q	G	V	F	M	T	M	V	Q	L	P	A	G	A	T	Q	E	R	T	Q	K	V	L	N	E	V	T	H	Y	Y	L	T	K	E	K	N	N	V	E	S	V	F
Template Known Secondary structure																													S	S		B		S	S						S										T	T																			T	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
		171	.	.												.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	N	N	.	.	.	.	.	.	.	.	.	.	.	Y	G	L	S	I	T	F	R	D	A	K	A	R	D	E	A	I	A	Y	L	S	K	R	H	P	D	L	V	I	S	S	Q	G	S	N	Q	L	R	A	V	M	S	D	A	R	L	S	E	A	R	E	Y	A	V	Q	Q	N	I	N	I	L	R	N	R	V	N
Query Conservation					.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	N	G	F	G	F	A	G	R	G	Q	N	T	G	I	A	F	V	S	L	K	D	W	A	D	R	P	G	E	E	N	K	V	E	A	I	T	M	R	A	T	R	A	F	S	Q	I	K	D	A	M	V	F	A	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	A	I	V	E	L	G	T
Template Known Secondary structure								S	S																G	G	G			S	S	T	T	S													T	T	S		S	S					B		.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S		S	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.															.	.	670	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	G	V	A	E	P	V	V	Q	R	Q	G	A	D	R	I	V	V	E	L	P	G	I	Q	D	T	A	R	A	K	E	I	L	G	A	T	A	T	L	E	F	R	L	V	N	T	N	V	D	Q	A	A	A	A	S	G	R	V	P	G	D	S	E	V	K	Q	T	R	E	G	Q	P	V	V	L	Y	K	R	V
Query Conservation
Alig confidence																																								.	.	.	.	.
Template Conservation																																								.	.	.	.	.
Template Sequence		A	T	G	F	D	F	E	L	I	D	Q	A	G	L	G	H	E	K	L	T	Q	A	R	N	Q	L	L	A	E	A	A	K	H	P	M	L	T	S	.	.	.	.	.	V	R	P	N	G	L	E	D	T	P	Q	F	K	I	D	I	D	Q	E	K	A	Q	A	L	G	V	S	I	N	D	I	N	T	T	L	G	A
Template Known Secondary structure		S	S										S	S																										.	.	.	.	.					S																				T
Template Predicted Secondary structure																																								.	.	.	.	.
Template SS confidence
		677	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.						.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	T	G	D	H	I	T	D	S	T	S	S	Q	D	E	Y	N	Q	P	Q	V	N	I	S	L	D	S	A	G	G	N	I	M	S	N	F	T	K	D	N	I	G	K	P	M	A	T	L	F	V	E	Y	K	D	S	G	K	K	D	A	N	G	R	A	V	L	V	K	Q	E	E	V	I	N	I	A	N	I	Q
Query Conservation
Alig confidence															.	.	.
Template Conservation															.	.	.
Template Sequence		A	W	G	G	S	Y	V	N	D	F	I	D	R	.	.	.	G	R	V	K	K	V	Y	V	M	S	E	A	K	Y	R	M	L	P	D	D	I	G	D	W	Y	V	R	A	A	D	G	Q	M	V	P	F	S	A	F	S	S	S	R	W	E	Y	G	S	P	R	L	E	R	Y	N	G	L	P	S	M	E	I	L	G
Template Known Secondary structure				T										T	.	.	.	T											G	G	G	S	S	S	G	G	G	G	G	G						T	T	S																		S						T	T
Template Predicted Secondary structure															.	.	.
Template SS confidence
		753	.	.	.	.	.	.	760	.	.	.	.	.				.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	L	G	N	S	F	R	I	T	G	I	N	N	P	N	E	A	R	Q	L	S	L	L	L	R	A	G	A	L	I	A	P	I	Q	I	V	E	E	R	T	I	G	P	T	L	G	M	Q	N	I	E	Q	G	L	E	A	C	L	A	G	L	L	V	S	I	L	F	M	I	I	F	Y	K	K	F	G	L	I	A
Query Conservation
Alig confidence									.	.	.	.	.	.	.														.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.														.																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	A	P	G	K	S	.	.	.	.	.	.	.	T	G	E	A	M	E	L	M	E	Q	L	A	S	.	K	L	P	T	G	V	G	Y	D	W	S	G	N	Q	A	P	S	L	.	.	.	.	.	.	.	.	.	.	.	Y	A	I	S	L	I	V	V	F	L	C	L	A	A	L	Y	E	S	W	S	I	P	F
Template Known Secondary structure					S	S	S		.	.	.	.	.	.	.	T													.	T	S		T	T								T						.	.	.	.	.	.	.	.	.	.	.												T	T	S	S			S	S	S	G	G	G
Template Predicted Secondary structure									.	.	.	.	.	.	.														.																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		830	.	.	.	.	.	.								.	.	.	840	.	.	.	.	.	.	.	.	.		850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.												.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.		.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure																		.																																								.
Query SS confidence																		.																																								.
Query Sequence		T	S	A	L	I	A	N	L	I	L	I	V	G	I	M	S	.	L	L	P	G	A	T	L	S	M	P	G	I	A	G	I	V	L	T	L	A	V	A	V	D	A	N	V	L	I	N	E	R	I	K	E	E	L	S	N	.	G	R	T	V	Q	Q	A	I	D	E	G	Y	R	G	A	F	S	S	I	F	D	A	N
Query Conservation																		.																																								.
Alig confidence																		.																																								.
Template Conservation
Template Sequence		S	V	M	L	V	V	P	L	G	V	I	G	A	L	L	A	A	T	F	R	G	L	T	N	D	V	Y	F	Q	V	G	L	L	T	T	I	G	L	S	A	K	N	A	I	L	I	V	E	F	A	K	D	L	M	D	K	E	G	K	G	L	I	E	A	T	L	D	A	V	R	M	R	L	R	P	I	L	M	T	S
Template Known Secondary structure		T	G	G	G																S	S			B																															S	S	S				T	T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.
		558	.	560	.	.	.	.	.	.	.	.	.	570				.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		I	T	T	L	I	K	V	I	I	L	Y	A	V	.	.	.	G	T	G	A	I	K	G	F	A	I	T	T	G	I	G	V	A	T	S	M	F	T	A	I	V	G	T	R	A	I	V	N	L	L	Y	G	G	K	R	V	K
Query Conservation															.	.	.
Alig confidence															.	.	.
Template Conservation
Template Sequence		L	A	F	I	L	G	V	M	P	L	V	I	S	T	G	A	G	S	G	A	Q	N	A	V	G	T	G	V	M	G	G	M	V	T	A	T	V	L	A	I	F	F	V	P	V	F	F	V	V	V	R	R	R	F	S	R	K
Template Known Secondary structure								S					T	T			S	S		S																					T	S	S	S	S	S	S								T	T	T
Template Predicted Secondary structure
Template SS confidence
		980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.