Job Description P0ADR8 Confidence 100.00% Date Thu Jan 5 11:21:41 GMT 2012 Rank 2 Aligned Residues 440 % Identity 68% Template c3gh1A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted nucleotide-binding protein; PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	T	H	I	S	P	L	G	S	M	D	M	L	S	Q	L	E	V	D	M	L	K	R	T	A	S	S	D	L	Y	Q	L	F	R	N	C	S	L	A	V	L	N	S	G	S	L	T	D	N	S	K	E	L	L	S	R	F	E	N	F	D	I	N	V	L	R	R	E	R	G	V	K	L	E	L	I	N	P	P
Query Conservation
Alig confidence																											.	.																		.	.	.
Template Conservation																											.	.																		.	.	.
Template Sequence		L	I	I	Q	V	S	P	A	G	S	X	D	L	L	S	Q	L	E	V	E	R	L	K	K	T	.	.	S	D	L	Y	Q	L	Y	R	N	C	S	L	A	V	L	N	S	.	.	.	T	D	N	S	K	E	L	L	D	K	Y	K	N	F	D	I	T	V	X	R	R	E	R	G	I	K	L	E	L	A	N	P	P
Template Known Secondary structure										T	T											T	T	S			.	.																		.	.	.			S	S	S		T	T	T	T	T	T	T									T	T								S
Template Predicted Secondary structure																											.	.																		.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	A	F	V	D	G	R	I	I	R	A	L	Q	A	N	L	F	A	V	L	R	D	I	L	F	V	Y	G	Q	I	H	N	T	V	R	F	P	N	L	N	L	D	N	S	V	H	I	T	N	L	V	F	S	I	L	R	N	A	R	A	L	H	V	G	E	A	P	N	M	V	V	C	W	G	G	H	S	I	N
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.
Template Sequence		E	H	A	F	V	D	G	Q	I	I	K	G	I	Q	E	H	L	F	S	V	L	R	D	I	V	Y	V	N	X	H	L	A	D	.	.	.	.	.	.	.	.	.	T	N	A	T	H	I	T	N	L	V	F	G	I	L	R	N	A	G	A	L	I	P	G	A	T	P	N	L	V	V	C	W	G	G	H	S	I	N
Template Known Secondary structure		G	G	G			T	T																							S	S			.	.	.	.	.	.	.	.	.																	T	T				T	T			S									S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.										.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	E	Y	L	Y	A	R	R	V	G	N	Q	L	G	L	R	E	L	N	I	C	T	G	C	G	P	G	A	M	E	A	P	M	K	G	A	A	V	G	H	A	Q	Q	R	Y	K	D	S	R	F	I	G	M	T	E	P	S	I	I	A	A	E	P	P	N	P	L	V	N	E	L	I	I	M	P	D	I	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	E	Y	Q	Y	T	R	E	V	G	H	E	L	G	L	R	E	L	N	I	C	T	G	C	G	P	G	A	X	E	G	P	X	K	G	A	A	V	G	H	A	K	Q	R	Y	S	E	Y	R	Y	L	G	L	T	E	P	S	I	I	A	A	E	P	P	N	P	I	V	N	E	L	V	I	X	P	D	I	E	K
Template Known Secondary structure																		T	T								S	S	G	G	G	T													T	T		T	T									T	T	T	T	T	T	S				T	T		S						S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	E	A	F	V	R	I	A	H	G	I	I	I	F	P	G	G	V	G	T	A	E	E	L	L	Y	L	L	G	I	L	M	N	P	A	N	K	D	Q	V	L	P	L	I	L	T	G	P	K	E	S	A	D	Y	F	R	V	L	D	E	F	V	V	H	T	L	G	E	N	A	R	R	H	Y	R	I	I	I	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	E	A	F	V	R	X	A	H	G	I	I	I	F	P	G	G	P	G	T	A	E	E	L	L	Y	I	L	G	I	X	X	H	P	E	N	A	D	Q	P	X	P	I	V	L	T	G	P	K	Q	S	E	A	Y	F	R	S	L	D	K	F	I	T	D	T	L	G	E	A	A	R	K	H	Y	S	I	A	I	D
Template Known Secondary structure											S						S		S															T	S	G	G	G	T	T											G	G	G																	G	G	G	G	G	G						S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	A	E	V	A	R	Q	M	K	K	S	M	P	L	V	K	E	N	R	R	D	T	G	D	A	Y	S	F	N	W	S	M	R	I	A	P	D	L	Q	M	P	F	E	P	S	H	E	N	M	A	N	L	K	L	Y	P	D	Q	P	V	E	V	L	A	A	D	L	R	R	A	F	S	G	I	V	A	G	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	P	A	E	A	A	R	I	X	S	N	A	X	P	L	V	R	Q	H	R	K	D	K	E	D	A	Y	S	F	N	W	S	L	K	I	E	P	E	F	Q	L	P	F	E	P	N	H	E	S	X	A	N	L	D	L	H	L	N	Q	R	P	E	V	L	A	A	N	L	R	R	A	F	S	G	V	V	A	G	N	V
Template Known Secondary structure																								T	T			S	S	S			S	S								S											T			B		S	S	S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.		.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		K	E	V	G	I	R	A	I	E	E	F	G	P	Y	K	I	N	G	D	K	E	I	M	R	R	M	D	D	L	L	Q	G	F	V	A	Q	H	R	M	K	L	P	.	G	S	A	Y	I	P	C	Y	E	I	C	T
Query Conservation																																												.
Alig confidence																																												.
Template Conservation
Template Sequence		K	A	E	G	I	R	E	I	E	R	H	G	P	F	E	X	H	G	D	P	V	L	X	K	K	X	D	Q	L	L	N	D	F	V	A	Q	N	R	X	K	L	P	G	G	S	A	Y	E	P	C	Y	K	I	V	T
Template Known Secondary structure														S					B																		T	T		S	S		S	S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.