Job Description P09169 Confidence 96.07% Date Thu Jan 5 11:02:08 GMT 2012 Rank 19 Aligned Residues 235 % Identity 10% Template c3brzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx Resolution 3.20 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.																			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	I	I	K	G	A	I	N	W	D	L	M	P	Q	I	S	I	G	A	A	G	W	T	T	L	G	S	R	G	G	N	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	Q	D	W	M	D	S	S	N	P	G	T	W	T	D	E	S	R	H	P	D	T	Q	L	N	Y	A	N
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	R	A	P	I	G	F	S	Y	Q	A	T	S	K	L	T	F	G	A	S	V	D	L	V	W	T	S	L	N	L	E	L	L	L	P	S	S	Q	V	G	A	L	T	A	Q	G	N	L	S	G	G	L	V	P	S	L	A	G	F	V	G	T	G	G	A	A	H	F	S	L	S	A	G	G	A	V	D	A	V
Template Known Secondary structure													S	S	S	S																															T	T					S						T	T	T	S	G	G	G												T	T
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		E	F	D	L	N	I	K	G	W	L	L	N	E	P	N	Y	R	L	G	L	M	A	G	Y	Q	E	S	R	Y	S	F	T	A	R	G	G	S	Y	I	Y	S	S	E	E	G	F	R	D	D	I	G	S	F	P	N	G	E	R	A	I	G	Y	K	Q	R	F	K	M	P	Y	I	G	L	T	G	S	Y	R	Y	.
Query Conservation																																																																																	.
Alig confidence																							.	.			.																			.	.	.																								.									.
Template Conservation																							.	.			.																			.	.	.																								.
Template Sequence		G	W	G	G	R	L	G	L	T	Y	K	L	T	D	N	T	V	L	G	A	M	.	.	Y	N	.	F	K	T	S	V	G	D	L	E	G	K	A	T	L	S	A	I	S	.	.	.	G	D	G	A	V	L	P	L	D	G	D	I	R	V	K	N	F	E	M	P	A	S	L	.	T	L	G	L	A	H	Q	F	N
Template Known Secondary structure														S	S	S							.	.			.			B																.	.	.	T	T	S																B					.								S	S
Template Predicted Secondary structure																							.	.			.																			.	.	.																								.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		E	D	F	E	L	G	G	T	F	K	Y	S	G	W	V	E	S	S	D	N	D	E	H	Y	D	P	G	K	.	.	R	I	T	Y	R	S	K	V	K	D	Q	N	Y	Y	S	V	A	V	N	A	G	Y	Y	V	T	P	N	A	K	V	Y	V	E	G	A	W	N	R	V	T	N	K	K	G	N	T	S	L	Y	D
Query Conservation																														.	.
Alig confidence																														.	.																																											.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.
Template Sequence		E	R	W	V	V	A	A	D	I	K	R	A	Y	W	G	D	V	M	D	S	M	N	V	A	F	I	S	Q	L	G	G	I	D	V	A	L	P	H	R	Y	Q	D	I	T	V	A	S	I	G	T	A	Y	K	Y	N	N	D	L	T	L	R	A	G	Y	S	Y	A	Q	L	I	L	P	.	.	.	.	.	.	.	V
Template Known Secondary structure		S	S													T	T			S									S	S																									S	S	S	S															T	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.								.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		H	N	N	N	T	S	D	Y	S	K	N	G	A	G	I	E	N	.	Y	N	F	I	T	T	A	G	L	K	Y	T	F
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		I	P	A	Y	L	K	R	H	V	T	F	G	G	E	Y	D	F	D	K	D	S	R	I	N	L	A	I	S	F	G	L
Template Known Secondary structure		S					S											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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