Job Description P09169 Confidence 51.02% Date Thu Jan 5 11:02:08 GMT 2012 Rank 35 Aligned Residues 217 % Identity 11% Template c2k4tA_ PDB info PDB header:membrane protein,apoptosis Chain: A: PDB Molecule:voltage-dependent anion-selective channel PDBTitle: solution structure of human vdac-1 in ldao micelles Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		I	N	A	D	I	S	L	G	T	L	S	G	K	T	K	E	R	V	Y	L	A	E	E	G	G	R	K	V	S	Q	L	D	W	K	F	N	N	A	A	I	I	K	G	A	I	N	W	D	L	M	P	Q	I	S	I	G	A	A	G	W	T	T	L	G	S	R	G	G	N	.	M	V	D	Q	D	W	M	D	S	S
Query Conservation																																																																							.
Alig confidence														.																		.																																							.
Template Conservation														.																		.
Template Sequence		G	S	A	N	T	E	T	T	K	V	T	G	.	S	L	E	T	K	Y	R	W	T	E	Y	G	L	T	F	T	E	.	K	W	N	T	D	N	T	L	G	T	E	I	T	V	E	D	Q	L	A	R	G	L	K	L	T	F	D	S	S	F	S	P	N	T	G	K	K	N	A	K	I	K	T	G	Y	K	R	E	H
Template Known Secondary structure						S	S	S						.										S	B							.				T	T	T												T	T													T	T	T														S	S
Template Predicted Secondary structure														.																		.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	G	T	W	T	D	E	S	R	H	P	D	T	Q	L	N	Y	A	N	E	F	D	L	N	I	K	G	W	L	L	N	E	P	N	Y	R	L	G	L	M	A	G	Y	Q	E	S	R	Y	S	F	T	A	R	G	G	S	Y	I	Y	S	S	E	E	G	F	R	D	D	I	G	S	F	P	N	G	E	R	A	I
Query Conservation
Alig confidence		.	.	.	.																									.	.	.	.	.																																									.
Template Conservation		.	.	.	.																									.	.	.	.	.																																									.
Template Sequence		.	.	.	.	I	N	L	G	C	D	M	D	F	D	I	A	G	P	S	I	R	G	A	L	V	L	G	Y	.	.	.	.	.	E	G	W	L	A	G	Y	Q	M	N	F	E	T	A	K	S	R	V	T	Q	S	N	F	A	V	G	Y	K	T	D	E	F	Q	L	H	T	N	V	N	D	.	G	T	E	F	G	G
Template Known Secondary structure		.	.	.	.										S	S	S	S												.	.	.	.	.	T	T											T	T	T	T	S													S	S									T	.	T	T
Template Predicted Secondary structure		.	.	.	.																									.	.	.	.	.																																									.
Template SS confidence
						123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.
		191	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		G	Y	K	Q	R	F	.	K	M	P	Y	I	G	L	T	G	S	Y	R	Y	E	D	F	E	L	G	G	T	F	K	Y	S	G	W	V	E	S	S	D	N	D	E	H	Y	D	P	G	K	R	I	T	Y	R	S	K	V	K	D	Q	N	Y	Y	S	V	A	V	N	A	G	Y	Y	V	T	P	N	A	K	V	Y	V
Query Conservation								.
Alig confidence								.																									.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Sequence		S	I	Y	Q	K	V	N	K	K	L	E	T	A	V	N	L	A	W	T	A	G	N	S	N	T	R	F	G	I	A	A	.	.	.	.	.	.	.	.	.	.	.	K	Y	Q	I	D	P	D	A	C	F	S	A	K	V	N	N	S	S	L	I	.	.	G	L	G	Y	T	Q	T	L	K	P	G	I	K	L	T	L
Template Known Secondary structure								S	T	T											T	T	S	S									.	.	.	.	.	.	.	.	.	.	.						T	T									S	S	S			.	.									S	S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.												.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	A	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions