Job Description P09169 Confidence 93.60% Date Thu Jan 5 11:02:08 GMT 2012 Rank 25 Aligned Residues 130 % Identity 21% Template c2jmmA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Resolution UNK

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		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		N	E	P	N	Y	R	L	G	L	M	A	G	Y	Q	E	S	R	Y	S	F	T	A	R	G	G	S	Y	I	Y	S	S	E	E	G	F	R	D	D	I	G	S	F	P	N	G	E	R	A	I	G	Y	K	Q	R	F	K	M	P	Y	I	G	L	T	G	S	Y	R	Y	.	E	D	F	E	L	G	G	T	F	K	Y
Query Conservation																																																																						.
Alig confidence																			.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																			.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	E	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	.	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	K	L	G	T	D	D	L	D	I	Y	T	R	L
Template Known Secondary structure			S	S													S	S	.	S												S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T		T	T	T
Template Predicted Secondary structure																			.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.																				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	W	V	E	S	S	D	N	D	E	H	Y	D	P	G	K	R	I	T	Y	R	S	K	V	K	D	Q	N	Y	Y	S	V	A	V	N	A	G	Y	Y	V	T	P	N	A	K	V	Y	V	E	G	A	W	N	R	V	T	N	K	K	G	N	T	S	L	Y	D	H	N	N	N	T	S	D	Y	S	K	N	G	A
Query Conservation
Alig confidence																																																							.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	M	V	W	R	A	D	T	S	D	K	D	G	N	G	Y	I	S	A	A	E	A	S	V	S	P	V	F	A	G	G	V	E	Y	V	I	R	R	R	I	T	P	E	I	A	T	R	L	E	Y	Q	W	.	.	.	T	N	N	A	S	D	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S	B						S	S	S						B																S	S	S		S	S	S										.	.	.		S	S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	E	N	Y	N	F	I	T	T	A	G	L	K	Y	T	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure		.	.	.	.	.	.	.										S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									141	.	.	.	.	.	.	.	.	150

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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