Phyre 2 alignment of P05042 with d1f1oa

Job Description P05042
Confidence 100.00% Date Thu Jan 5 10:58:37 GMT 2012

Rank 31 Aligned Residues 340

% Identity 19% Template d1f1oa_

SCOP info L-aspartase-like L-aspartase-like L-aspartase/fumarase

Resolution 3.25

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	M	P	T	S	L	I	H	A	L	A	L	T	K	R	A	A	A	K	V	N	E	D	L	G	L	L	S	E	E	K	A	S	A	I	R	Q	A	A	D	E	V	L	A	G	Q	H	D	D	E	F	P	L	A	I	W	Q	T	G	S	G	T	Q	S	N	M	N	M	N	E	V	L	A	N	R	A	S	E	L	L
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	W	T	D	E	N	R	F	Q	A	W	L	E	V	E	I	L	A	C	E	A	W	A	E	L	G	V	I	P	K	E	D	V	K	V	M	R	E	N	A	S	.	.	.	.	.	.	.	.	.	.	.	.	F	D	I	N	R	I	L	E	I	E	K	D	T	R	H	D	V	V	A	F	T	R	A	V	S	E	S	L
Template Known Secondary structure	T	S	T	T																				T	T	S	S		T	T	T							S			.	.	.	.	.	.	.	.	.	.	.	.				G	G	G	S	S	S	S	S							T							T	S		S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.													.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	G	V	R	G	M	E	R	K	V	H	P	N	D	D	V	N	K	S	Q	S	S	N	D	V	F	P	T	A	M	H	V	A	A	L	L	A	L	R	K	Q	L	I	P	Q	L	K	T	L	T	Q	T	L	N	E	K	S	R	A	F	A	D	I	V	K	I	G	R	T	H	L	Q	D	A	T	P	L	T	L	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																								.																																.	.
Template Conservation		.	.	.	.	.	.	.	.	.																								.																																.	.
Template Sequence	G	.	.	.	.	.	.	.	.	.	E	E	R	K	W	V	H	Y	G	L	T	S	T	D	V	V	D	T	A	L	S	Y	L	.	L	K	Q	A	N	D	I	L	L	K	D	L	E	R	F	V	D	I	I	K	E	K	A	K	E	H	K	Y	T	V	M	.	.	M	T	H	G	V	H	A	E	P	T	T	F	G
Template Known Secondary structure	S	.	.	.	.	.	.	.	.	.		S	S	S	S																			.																						T	T	T					S	S	S	.	.	S	S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																								.																																.	.
Template SS confidence
	82										.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.

	199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	E	I	S	G	W	V	A	M	L	E	H	N	L	K	H	I	E	Y	S	L	P	H	V	A	E	L	A	L	G	G	T	A	V	G	T	G	L	N	T	H	P	E	Y	A	R	R	V	A	D	E	L	A	V	I	T	C	A	P	F	V	T	A	P	N	K	F	E	A	L	A	T	C	D	A	L	V	Q	A	H
Query Conservation
Alig confidence																																.						.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																																.						.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Sequence	L	K	L	A	L	W	H	E	E	M	K	R	N	L	E	R	F	K	Q	A	K	A	G	I	E	V	G	K	I	S	G	.	N	I	D	P	F	.	.	.	.	.	.	.	.	.	.	V	E	Q	Y	V	C	E	K	L	G	L	K	A	A	P	I	S	.	.	.	T	Q	T	L	Q	R	D	R	H	A	D	Y	M
Template Known Secondary structure																							T							S		.	S	S	T	T	T	.	.	.	.	.	.	.	.	.	.	T	T	T						T	T					S	S		.	.	.		S	S			T
Template Predicted Secondary structure																																.						.	.	.	.	.	.	.	.	.	.																		.	.	.
Template SS confidence
	152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.											.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.

	279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	A	L	K	G	L	A	A	S	L	M	K	I	A	N	D	V	R	W	L	A	S	G	P	R	C	G	I	G	E	I	S	I	P	E	N	E	P	G	S	S	I	M	P	G	K	V	N	P	T	Q	C	E	A	L	T	M	L	C	C	Q	V	M	G	N	D	V	A	I	N	M	G	G	A	S	G	N	F	E	L
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.																																.
Template Conservation																														.	.	.	.	.	.	.	.	.																																.
Template Sequence	A	T	L	A	L	I	A	T	S	I	E	K	F	A	V	E	I	R	G	L	Q	K	S	E	T	R	E	V	E	.	.	.	.	.	.	.	.	.	E	F	S	A	M	P	H	K	R	N	P	I	G	S	E	N	M	T	G	M	A	R	V	I	R	G	Y	M	M	T	A	.	Y	E	N	V	P	L	W	H	E	R
Template Known Secondary structure																					S	S	S	S	S		S			.	.	.	.	.	.	.	.	.	S	S	S	S	S	S	T	T																						T	S	.		S	S	T	T				T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.																																.
Template SS confidence
	224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.										.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.

	359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	V	F	R	P	M	V	I	H	N	F	L	Q	S	V	R	L	L	A	D	G	M	E	S	F	N	K	H	C	A	V	G	I	E	P	N	R	E	R	I	N	Q	L	L	N	E	S	L	M	L	V	T	A	L	N	T	H	I	G	Y	D	K	A	A	E	I	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence	D	I	S	H	S	S	A	E	R	I	I	L	P	D	A	T	I	A	L	N	Y	M	L	N	R	F	S	N	I	V	K	N	L	T	V	F	P	E	N	M	K	R	N	L	I	Y	S	Q	R	V	L	L	A	E	E	K	I	T	S	R	L	S	P	E	K	I	A	D
Template Known Secondary structure				T	T	T																				T	T					T	T	T							T	T		S	S	S	S	S	S		S	S		S					G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
	302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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