Job Description P05042 Confidence 100.00% Date Thu Jan 5 10:58:37 GMT 2012 Rank 23 Aligned Residues 394 % Identity 22% Template c3c8tA_ PDB info PDB header:lyase Chain: A: PDB Molecule:fumarate lyase; PDBTitle: crystal structure of fumarate lyase from mesorhizobium sp. bnc1 Resolution 2.20 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	W	G	A	Q	T	Q	R	S	L	E	H	F	R	I	S	T	E	K	M	P	T	S	L	I	H	A	L	A	L	T	K	R	A	A	A	K	V	N	E	D	L	G	L	L	S	E	E	K	A	S	A	I	R	Q	A	A	D	E	V	L	A	G	Q	H	D	D	E	F	P	L	A	I	W	Q	T	G	S	G
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.
Template Sequence		R	S	F	A	D	D	K	M	R	E	L	.	.	.	.	.	.	.	.	F	S	A	Q	S	F	I	S	R	C	V	E	T	E	V	A	L	A	R	A	Q	A	R	L	G	I	I	P	E	D	A	A	A	G	I	T	A	A	A	R	T	F	A	.	.	.	.	.	.	.	.	.	P	E	M	E	R	L	R	D	D
Template Known Secondary structure					S								.	.	.	.	.	.	.	.	T	S																						T	T	S	S																	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.									.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.										.	.	.	80	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	S	N	M	N	M	N	E	V	L	A	N	R	A	S	E	L	L	G	G	V	R	G	M	E	R	K	V	H	P	N	D	D	V	N	K	S	Q	S	S	N	D	V	F	P	T	A	M	H	V	A	A	L	L	A	L	R	K	Q	L	I	P	Q	L	K	T	L	T	Q	T	L	N	E	K	S	R	A	F	A
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.																															.
Template Conservation																						.	.	.	.	.	.	.	.	.																															.
Template Sequence		T	E	I	V	G	Y	P	I	L	P	L	V	E	Q	L	S	A	H	A	G	.	.	.	.	.	.	.	.	.	E	A	G	K	Y	L	H	W	G	A	T	T	Q	D	I	M	D	T	A	T	V	L	Q	I	R	D	G	L	A	L	.	I	S	R	R	I	E	S	V	R	K	A	L	A	A	L	A	R	N	H	R
Template Known Secondary structure						S	S	S													G	.	.	.	.	.	.	.	.	.	G	G	G	G	G	S	S	S	S																						.																			T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																															.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.										.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	V	K	I	G	R	T	H	L	Q	D	A	T	P	L	T	L	G	Q	E	I	S	G	W	V	A	M	L	E	H	N	L	K	H	I	E	Y	S	L	P	H	V	A	E	L	A	L	G	G	T	A	V	G	T	G	L	N	T	H	P	E	Y	A	R	R	V	A	D	E	L	A	V	I	T	C	A	P	F	V
Query Conservation
Alig confidence																																																				.												.																.	.
Template Conservation																																																				.												.																.	.
Template Sequence		D	T	P	M	A	G	R	T	H	L	Q	H	A	L	P	V	T	F	G	Y	K	A	A	V	W	L	S	A	F	D	R	H	A	A	R	L	E	E	I	S	P	R	V	L	V	V	E	F	S	G	.	A	S	G	T	L	A	S	L	G	T	R	.	G	L	D	V	Q	R	E	L	A	R	E	L	N	L	G	.	.
Template Known Secondary structure		T								T	T																																			B						.	T	T	S	S		G	G	G	T	T		.													T		B	.	.
Template Predicted Secondary structure																																																				.												.																.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	P	N	K	F	E	A	L	A	T	C	D	A	L	V	Q	A	H	G	A	L	K	G	L	A	A	S	L	M	K	I	A	N	D	V	R	W	L	A	S	G	P	R	C	G	I	G	E	I	S	I	P	E	N	E	P	G	S	S	I	M	P	G	K	V	N	P	T	Q	C	E	A	L	T	M	L	C	C	Q
Query Conservation
Alig confidence		.	.																																								.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																								.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	V	P	S	I	T	W	H	S	A	R	D	A	V	A	E	T	V	Q	F	L	A	L	V	S	G	S	L	G	K	L	A	M	D	I	S	I	M	M	T	.	.	.	T	E	L	G	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	P	N	P	V	S	C	E	L	I	L	A	G	A	R	I
Template Known Secondary structure		.	.			S	S			S	S																														T	S	.	.	.	T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.																																								.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.														.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.							.	410	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.
Query Sequence		V	M	G	N	D	V	A	I	N	M	G	G	A	S	G	N	F	E	L	N	V	F	R	P	M	V	I	H	N	F	L	Q	S	V	R	L	L	A	D	G	M	E	S	F	N	K	H	C	A	V	G	I	E	P	N	R	E	R	I	N	Q	L	L	N	E	S	L	M	L	.	.	.	.	.	.	V	T	A	L	N
Query Conservation																																																																							.	.	.	.	.	.
Alig confidence										.																																																													.	.	.	.	.	.
Template Conservation										.
Template Sequence		V	R	N	H	A	T	S	M	.	L	D	A	M	I	H	D	F	E	R	A	T	G	P	W	H	L	E	W	S	A	V	P	E	G	F	A	V	A	S	G	I	L	Y	Q	A	E	F	M	L	G	G	L	Q	V	F	P	D	R	M	R	E	N	L	D	H	S	R	G	L	I	V	A	E	A	V	M	M	A	L	A
Template Known Secondary structure										.				T				T	T																																	S													T	T	T	T	T	G	G	G
Template Predicted Secondary structure										.
Template SS confidence
		309	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		414	.	.	.					.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.					.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure						.	.	.	.																									.	.	.	.
Query SS confidence						.	.	.	.																									.	.	.	.
Query Sequence		T	H	I	G	.	.	.	.	Y	D	K	A	A	E	I	A	K	K	A	H	K	E	G	L	T	L	K	A	A	A	L	A	.	.	.	.	L	G	Y	L	S	E	A	E	F	D	S	W	V	R	P	E	Q	M	V	G	S	M
Query Conservation						.	.	.	.																									.	.	.	.
Alig confidence						.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence		P	H	T	G	R	K	E	A	H	D	I	V	Y	L	G	C	R	R	A	V	E	D	K	T	G	L	F	E	V	L	R	T	M	P	E	V	A	K	P	L	G	E	E	A	L	R	D	L	T	D	P	R	N	Y	L	G	S	A
Template Known Secondary structure																							T	T	S							T	T																	T		G	G	G			T	T
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.