Job Description P05042 Confidence 25.68% Date Thu Jan 5 10:58:37 GMT 2012 Rank 34 Aligned Residues 49 % Identity 27% Template c2xgvA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:psiv capsid n-terminal domain; PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik) Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	S	S	N	D	V	F	P	T	A	M	H	V	A	A	L	L	A	L	R	K	Q	L	I	P	Q	L	K	T	L	T	Q	T	L	N	E	K	S	R	A	F	A	D	I	V	K	I	G	R	T	H	L	Q	D	A	T	P	L	T	L	G	Q
Query Conservation
Alig confidence								.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Sequence		D	L	S	S	R	E	.	.	.	.	.	.	.	Q	V	Q	L	L	E	V	V	P	G	L	Q	A	D	K	D	M	L	G	A	Y	L	E	E	R	A	R	E	W	D	.	.	.	.	.	.	.	A	Q	P	Q	Q	P	L	P	Y	T	S	A	H
Template Known Secondary structure		T						.	.	.	.	.	.	.										S																					.	.	.	.	.	.	.	T	S	S		S	S		S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template SS confidence
		46	.	.	.	50	.								.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.								.	.	.	.	.	.	.	.	90	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions