Phyre 2 alignment of P05042 with c2fenA

Job Description P05042
Confidence 100.00% Date Thu Jan 5 10:58:37 GMT 2012

Rank 30 Aligned Residues 330

% Identity 21% Template c2fenA_

PDB info PDB header:isomerase Chain: A: PDB Molecule:3-carboxy-cis,cis-muconate lactonizing enzyme; PDBTitle: 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium2 radiobacter s2

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	17	.	.	20						.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure					.	.	.	.	.
Query SS confidence					.	.	.	.	.
Query Sequence	P	A	D	K	.	.	.	.	.	L	W	G	A	Q	T	Q	R	S	L	E	H	F	R	I	S	T	E	K	M	P	T	S	L	I	H	A	L	A	L	T	K	R	A	A	A	K	V	N	E	D	L	G	L	L	S	E	E	K	A	S	A	I	R	Q	A	A	D	E	V	L	A	G	Q	H	D	D	E	F	P	L
Query Conservation					.	.	.	.	.
Alig confidence					.	.	.	.	.											.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.
Template Sequence	P	F	E	H	P	F	L	S	G	L	F	G	D	S	E	I	I	E	L	.	.	.	.	.	.	.	.	F	S	A	K	A	D	I	D	A	M	I	R	F	E	T	A	L	A	Q	A	E	A	E	A	S	I	F	A	D	D	E	A	E	A	I	V	S	G	L	S	.	.	.	.	.	.	.	.	.	E	F	A	A
Template Known Secondary structure	T	T	S		T	T	T											G	G	.	.	.	.	.	.	.	.	G	S																						T	T	S	S														.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.
Template SS confidence
	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.									.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.										.	.	.	.

	92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	I	W	Q	T	G	S	G	T	Q	S	N	M	N	M	N	E	V	L	A	N	R	A	S	E	L	L	G	G	V	R	G	M	E	R	K	V	H	P	N	D	D	V	N	K	S	Q	S	S	N	D	V	F	P	T	A	M	H	V	A	A	L	L	A	L	R	K	Q	L	I	P	Q	L	K	T	L	T	Q	T	L
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.																								.
Template Conservation																																			.	.	.	.	.	.	.	.																								.
Template Sequence	D	M	S	A	L	R	H	G	V	A	K	D	G	V	V	V	P	E	L	I	R	Q	M	R	A	A	V	A	G	Q	A	A	D	K	.	.	.	.	.	.	.	.	V	H	F	G	A	T	S	Q	D	V	I	D	T	S	L	M	L	R	L	K	M	A	A	.	E	I	I	A	T	R	L	G	H	L	I	D	T	L
Template Known Secondary structure													S	S	S											T	S		S	G	G	G	G	S	.	.	.	.	.	.	.	.	T	T	T	T																				.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.																								.
Template SS confidence
	68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.									.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.

	172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	E	K	S	R	A	F	A	D	I	V	K	I	G	R	T	H	L	Q	D	A	T	P	L	T	L	G	Q	E	I	S	G	W	V	A	M	L	E	H	N	L	K	H	I	E	Y	S	L	P	H	V	A	E	L	A	L	G	G	T	A	V	G	T	G	L	N	T	H	P	E	Y	A	R	R	V	A	D	E	L	A
Query Conservation
Alig confidence																																																											.												.
Template Conservation																																																											.												.
Template Sequence	G	D	L	A	S	R	D	G	H	K	P	L	T	G	Y	T	R	M	Q	A	A	I	G	I	T	V	A	D	R	A	A	G	W	I	A	P	L	E	R	H	L	L	R	L	E	T	F	A	Q	N	G	F	A	L	Q	F	G	G	.	A	A	G	T	L	E	K	L	G	D	N	.	A	G	A	V	R	A	D	L	A
Template Known Secondary structure							S	T	T	S							T	T																																	S	S	B						.	T	T	S	S		T	T	T	G	G	G	.
Template Predicted Secondary structure																																																											.												.
Template SS confidence
	139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.

	252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	I	T	C	A	P	F	V	T	A	P	N	K	F	E	A	L	A	T	C	D	A	L	V	Q	A	H	G	A	L	K	G	L	A	A	S	L	M	K	I	A	N	D	V	R	W	L	A	S	G	P	R	C	G	I	G	E	I	S	I	P	E	N	E	P	G	S	S	I	M	P	G	K	V	N	P	T	Q	C	E
Query Conservation
Alig confidence							.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	R	L	G	L	A	.	.	.	.	.	D	R	P	Q	W	H	N	Q	R	D	G	I	A	E	F	A	N	L	L	S	L	V	T	G	T	L	G	K	F	G	Q	D	I	A	L	M	A	.	.	.	.	.	.	.	.	.	.	.	.	E	I	G	S	E	I	R	L	S	G	G	G	K	Q	N	P	V	N	A	E
Template Known Secondary structure			T	T		B	.	.	.	.	.						T	T																															.	.	.	.	.	.	.	.	.	.	.	.				S	S					S
Template Predicted Secondary structure							.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	217	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.													260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

	332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L	T	M	L	C	C	Q	V	M	G	N	D	V	A	I	N	M	G	G	A	S	G	N	F	E	L	N	V	F	R	P	M	V	I	H	N	F	L	Q	S	V	R	L	L	A	D	G	M	E	S	F	N	K	H	C	A	V	G	I	E
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence	T	L	V	T	L	A	R	F	N	A	V	.	Q	I	S	A	L	H	Q	S	L	V	Q	E	Q	E	R	S	G	A	G	W	M	L	E	W	L	T	L	P	Q	M	V	T	A	T	G	T	S	L	L	V	A	E	R	L	A	A	Q	I	D
Template Known Secondary structure												.								T	T				T	T																																	T
Template Predicted Secondary structure												.
Template SS confidence
	287	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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