Job Description P34209 Confidence 8.81% Date Thu Jan 5 11:53:02 GMT 2012 Rank 93 Aligned Residues 194 % Identity 10% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																													.	.	.	.																																.	.
Query SS confidence																													.	.	.	.																																.	.
Query Sequence		N	V	I	G	Q	W	L	A	Q	D	D	F	S	G	E	V	P	Y	Q	A	D	C	V	I	L	A	G	.	.	.	.	N	A	V	M	P	T	I	D	A	A	C	K	I	A	R	D	Q	Q	I	P	L	L	I	S	G	G	I	G	H	S	T	.	.	T	F	L	Y	S	A	I	A	Q	H	P	H	Y	N	T	I
Query Conservation																													.	.	.	.																																.	.
Alig confidence																													.	.	.	.																																.	.
Template Conservation
Template Sequence		E	E	L	T	K	F	L	G	T	E	A	K	P	I	E	I	K	E	K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G
Template Known Secondary structure								T	T	S	S								S	S	S									T	T	S	S														T	T	T											S	S	T											G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	T	G	R	A	E	A	T	I	L	A	D	I	A	H	Q	F	W	H	I	P	H	E	K	I	W	I	E	D	Q	S	T	N	C	G	E	N	A	R	F	S	I	A	L	L	N	Q	A	V	E	R	V	H	T	A	I	V	V	Q	D	P	T	M	Q	R	R	T	M	A	T	F	R	R	M	T	G	D	N	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	T	I	G	Q	Q	A	Y	N	Q	A	L	A	F	K	E	A	T	P
Template Known Secondary structure			T	T																		T	T		S										S	S																			S								G	G	G	G	G	G											S		T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200																.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	P	R	W	L	S	Y	P	G	F	V	P	Q	L	G	N	N	A	D	S	V	I	F	I	N	Q	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	W	P	V	E	R	Y	L	S	L	L	T	G
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.
Template Sequence		I	G	S	I	I	V	.	.	.	T	K	L	D	G	S	A	K	G	G	G	A	L	S	A	V	A	A	T	G	A	P	I	K	F	I	G	T	G	E	K	I	D	D	I	E	P	F	D	P	P	R	F	V	S	R	L	L	G
Template Known Secondary structure		T						.	.	.				S	S		S	S										T	T										S	S	S	T	T															T	T
Template Predicted Secondary structure								.	.	.
Template SS confidence
		241	.	.	.	.	.				.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions