Job Description P25737 Confidence 100.00% Date Wed Jan 25 15:20:45 GMT 2012 Rank 3 Aligned Residues 452 % Identity 11% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	T	K	T	T	E	A	P	G	L	R	R	E	L	K	A	R	H	L	T	M	I	A	I	G	G	S	I	G	T	G	L	F	V	A	S	G	A	T	I	S	Q	A	G	P	G	G	A	L	L	S	Y	M	L	I	G	L	M	V	Y	F	L	M	T	S	L	G	E	L	A	A	Y	M	P	V	S	G	S	F
Query Conservation
Alig confidence																																																																													.	.
Template Conservation																																																																													.	.
Template Sequence		L	N	P	S	N	A	P	T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	.	.	I	N	F
Template Known Secondary structure				S	T	T	S				G	G	G			B															S	T										T	T	T	S																								T								.	.
Template Predicted Secondary structure																																																																													.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	Y	G	Q	N	Y	V	E	E	G	F	G	F	A	L	G	W	N	Y	W	Y	N	W	A	V	T	I	A	V	D	L	V	A	A	Q	L	V	M	S	W	W	F	P	D	T	P	G	W	I	W	S	A	L	F	L	G	V	I	F	L	L	N	Y	I	S	V	R	G	F	G	E	A	E	Y	W	F	S	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	A	A	R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F
Template Known Secondary structure					T	T	T	T	S		T	T	T	T																																																							T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	T	T	V	I	V	F	I	I	V	G	V	L	M	I	I	G	I	F	K	G	A	Q	P	A	G	W	S	N	W	T	I	G	E	A	P	F	A	G	G	F	A	A	M	I	G	V	A	M	I	V	G	F	S	F	Q	G	T	E	L	I	G	I	A	A	G	E	S	E	D	P	A	K	N	I	P	R	A	V
Query Conservation
Alig confidence																												.	.
Template Conservation																												.	.
Template Sequence		A	S	P	V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	.	.	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A
Template Known Secondary structure																						T						.	.		T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure																												.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	V	F	W	R	I	L	L	F	Y	V	F	A	I	L	I	I	S	L	I	I	P	Y	T	D	P	S	L	L	R	N	D	V	K	D	I	S	V	S	P	F	T	L	V	F	Q	H	A	G	L	L	S	A	A	A	V	M	N	A	V	I	L	T	A	V	L	S	A	G	N	S	G	M	Y	A	S	T	R	M
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.																																				.
Template Conservation																																				.	.	.	.	.	.	.																																				.
Template Sequence		D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	.	.	.	.	.	.	.	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	.	N	L	L
Template Known Secondary structure																																S		S		.	.	.	.	.	.	.										T																				T	T					.		T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.																																				.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.								.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	T	L	A	C	D	G	K	A	P	R	I	F	A	K	L	S	R	G	G	V	P	R	N	A	L	Y	A	T	T	V	I	A	G	L	C	F	L	T	S	M	F	G	N	Q	T	V	Y	L	W	L	L	N	T	S	G	M	T	G	F	I	A	W	L	G	I	A	I	S	H	Y	R	F	R	R	G	Y	V	L
Query Conservation
Alig confidence													.	.	.	.	.	.	.																																								.	.	.	.
Template Conservation													.	.	.	.	.	.	.																																								.	.	.	.
Template Sequence		S	P	A	Y	T	L	C	S	T	F	P	.	.	.	.	.	.	.	R	V	F	T	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	.	.	.	.	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I
Template Known Secondary structure											S	T	.	.	.	.	.	.	.	T	T																	T		G	G	G	T														T	T	.	.	.	.													T	T	S	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.																																								.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.								.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370					.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	H	D	I	N	D	L	P	Y	R	S	G	F	F	P	L	G	P	I	F	A	F	I	L	C	L	I	I	T	L	G	Q	N	Y	E	A	F	L	K	D	T	I	D	W	G	G	V	A	A	T	Y	I	G	I	P	L	F	L	I	I	W	F	G	Y	K	L	I	K	G	T	H	F	V	R	Y	S	E	M	K
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	.	.	.	.	.	.	.	.	.	.	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E
Template Known Secondary structure							T	B	S	S	S	T	T		T	B	T	T	B																	T		G	G	G	.	.	.	.	.	.	.	.	.	.																					T	T	T	S		S			G	G	G
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.											.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		483	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	Q	N	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	N	E	D
Template Known Secondary structure		G	G
Template Predicted Secondary structure
Template SS confidence
		460	.	.	.	.