 |
Job Description | P0A6H8 | Confidence | 14.88% | Date | Thu Jan 5 11:03:10 GMT 2012 |
Rank | 57 | Aligned Residues | 66 |
% Identity | 14% | Template | c2pjuD_ |
PDB info |
PDB header:transcription | Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; |
PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr
|
Resolution | 2.10 Å |
|
 |
  |   |
104 | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | K | L | C | E | R | R | Q | G | I | A | G | V | K | G | N | Q | L | Q | L | M | T | E | S | D | D | V | M | Q | A | L | I | R | D | I | Q | L | A | R | H | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | E | M | V | F | Y | I | W | Q | P | G | G | M | A | D | Q | V | A | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |   |   |   |
|
|
| . | . | . | . | . |
|
|
|   |
|
|   |   |
|
|
|   |
|
|   |   |
|   |   |   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   | . | . | . |
|   |   |   |
Template Sequence |   |
G | A | Y | L | K | S | R | L | S | V | P | V | . |
. |
. |
. |
. |
I | L | I | K | P | S | G | Y | D | V | L | Q | F | L | A | K | A | G | K | L | T | S | S | I | G | V | V | T | Y | Q | E | T | I | P | A | L | V | A | F | Q | K | T | F | N | L | R | L | D | Q | R | S | Y | I | T | E | E | . |
. |
. |
D | A | R | G |
Template Known Secondary structure |   |
 |  |  |  |  | T | T |
| S | S |
|  | . | . | . | . | . |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  | T | T |
| T | T | S |  |  |  |  |  |  |  | S | S |
|
|  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  | S | S |  |  | . | . | . |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  | . | . | . | . | . |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|  |  | . | . | . |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
72 | . | . | . | . | . | . | . | 80 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | |
|
|
140 | . | . | . |
  |
  |   |
164 | . | . | . | . | . | 170 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | L | M | A | A | A | R | R | G | I | H | C | R | L |
Query Conservation |   |
  |
|   |   |
|
|   |
|
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|   |   |   |
|   |   |
|
|
|
Template Sequence |   |
Q | I | N | E | L | K | A | N | G | T | E | A | V | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T |
|
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
144 | . | . | . | . | . | 150 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|