Job Description P0A6H8 Confidence 99.90% Date Thu Jan 5 11:03:10 GMT 2012 Rank 7 Aligned Residues 279 % Identity 15% Template c2o8rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.						.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.
Query SS confidence																							.	.	.	.	.
Query Sequence		L	M	T	E	S	D	D	V	M	Q	A	L	I	R	D	I	Q	L	A	R	H	.	.	.	.	.	N	I	E	M	V	F	Y	I	W	Q	P	G	G	M	A	D	Q	V	A	E	S	L	M	A	A	A	R	R	G	I	H	C	R	L	M	L	D	S	A	G	S	V	A	F	F	R	S	P	W	P	E	L	M	R
Query Conservation																							.	.	.	.	.
Alig confidence																							.	.	.	.	.														.	.	.																											.	.	.
Template Conservation																																									.	.	.																											.	.	.
Template Sequence		L	I	H	V	P	Y	Y	T	Y	D	Y	V	V	R	L	L	X	E	A	A	I	S	P	D	V	S	E	I	R	L	T	Q	Y	R	V	A	E	N	S	.	.	.	S	I	I	S	A	L	E	A	A	A	Q	S	G	K	K	V	S	V	F	V	E	L	K	A	R	F	.	.	.	N	L	R	L	S	E	R	X	R
Template Known Secondary structure						T	T	B		S												T		T	T									S				S			.	.	.												T	T											S			.	.	.
Template Predicted Secondary structure																																									.	.	.																											.	.	.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.				.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.				.	410	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230						.	.	.					.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.				.	.	.	.																																			.
Query SS confidence																																			.	.	.	.	.				.	.	.	.																																			.
Query Sequence		N	A	G	I	E	V	V	E	A	L	K	V	N	L	M	R	V	F	L	R	R	M	D	L	R	Q	H	R	K	M	I	M	I	.	.	.	.	.	D	N	Y	.	.	.	.	I	A	Y	T	G	S	M	N	M	V	D	P	R	Y	F	K	Q	D	A	G	V	G	Q	W	I	D	L	M	A	R	M	E	G	P	.
Query Conservation																																			.	.	.	.	.				.	.	.	.																																			.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.				.	.	.	.												.	.	.	.	.	.	.																	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Sequence		R	S	G	I	R	I	V	Y	S	X	P	G	L	K	V	.	.	.	.	.	.	.	.	.	.	.	H	A	K	T	A	L	I	L	Y	H	T	P	A	G	E	R	P	Q	G	I	A	L	L	S	T	G	N	F	N	E	.	.	.	.	.	.	.	T	T	A	R	I	Y	S	D	T	T	L	X	T	A	N	T	D
Template Known Secondary structure				T								T	T			B	.	.	.	.	.	.	.	.	.	.	.													S	S	S										S	S		S	S		.	.	.	.	.	.	.			S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.												.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.								.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.					.	.	.	.	340	.	.	.
Predicted Secondary structure																																																																						.	.	.	.
Query SS confidence																																																																						.	.	.	.
Query Sequence		I	A	T	A	M	G	I	I	Y	S	C	D	W	E	I	E	T	G	K	R	I	L	P	P	P	P	D	V	N	I	M	P	F	E	Q	A	S	G	H	T	I	H	T	I	A	S	G	P	G	F	P	E	D	L	I	H	Q	A	L	L	T	A	A	Y	S	A	R	E	.	.	.	.	Y	L	I	M	T	T	P	Y
Query Conservation																																																																						.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	H	D	V	Y	R	L	F	R	I	L	D	G	D	P	E	P	A	R	F	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	V	A	R	Y	N	X	G	E	A	I	T	N	L	I	E	R	E	I	E	N	V	K	R	G	K	R	G	Y	X	L	L	K	X	N	G
Template Known Secondary structure														T	T					S			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	T																		T	T										S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.																					.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370					.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410				.	.	.	.	.
Predicted Secondary structure																													.	.	.	.																																		.								.	.	.
Query SS confidence																													.	.	.	.																																		.								.	.	.
Query Sequence		F	V	P	S	D	D	L	L	H	A	I	C	T	A	A	Q	R	G	V	D	V	S	I	I	L	P	R	.	.	.	.	K	N	D	S	M	L	V	G	W	A	S	R	A	F	F	T	E	L	L	A	A	G	V	K	I	Y	Q	F	E	G	G	L	L	.	H	T	K	S	V	L	V	.	.	.	D	G	E	L	S
Query Conservation																													.	.	.	.																																		.								.	.	.
Alig confidence				.																									.	.	.	.							.			.	.	.	.	.	.	.	.	.	.	.	.													.								.	.	.
Template Conservation				.																																			.			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	.	D	K	N	V	I	T	Q	L	Y	R	A	S	E	A	G	V	E	I	D	L	I	V	R	G	I	C	C	L	V	P	D	X	P	Q	.	S	R	.	.	.	.	.	.	.	.	.	.	.	.	N	I	R	V	T	R	L	V	D	X	Y	L	E	H	S	R	I	W	C	F	H	N	G	G	K	E	E	V
Template Known Secondary structure		B		.														T	T								S	S		B		S			S	S	G	G	.	G	T	.	.	.	.	.	.	.	.	.	.	.	.	T								S	S	S											G	G	G	S
Template Predicted Secondary structure				.																																			.			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		544	.		.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.		580	.													.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	G	T	V	N	L	D	M	R	S	L	W	L	N	F	E	I	T	L	A	I	D	D	K	G	F	G	A	D	L	A	A	V	Q	D	D	Y	I	S	R	S	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	I	S	S	A	D	W	X	K	R	N	L	Y	N	R	I	E	T	A	C	P	V	L	D	P	T	L	R	R	E	I	I	D	I	L	E	I	Q	L	R	D	N	I	K
Template Known Secondary structure					S			B							T	S	B								S																			S	S
Template Predicted Secondary structure
Template SS confidence
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions