Job Description P0A6H8 Confidence 97.70% Date Thu Jan 5 11:03:10 GMT 2012 Rank 12 Aligned Residues 213 % Identity 13% Template c1q32C_ PDB info PDB header:replication,transcription,hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna2 phosphodiesterase Resolution 2.03 Å

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		223	.	.	.	.	.	.	230				.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.			.
Query SS confidence										.	.	.			.
Query Sequence		Q	H	R	K	M	I	M	I	.	.	.	D	N	.	Y	I	A	Y	T	G	S	M	N	M	V	D	P	R	Y	F	K	Q	D	A	G	V	G	Q	W	I	D	L	M	A	R	M	E	G	P	I	A	T	A	M	G	I	I	Y	S	C	D	W	E	I	E	T	G	K	R	I	L	P	P	P	P	D	V	N	I	M
Query Conservation										.	.	.			.
Alig confidence										.	.	.			.																.																																				.
Template Conservation																															.																																				.
Template Sequence		H	H	T	K	L	I	I	N	F	Y	D	N	G	E	C	K	I	F	L	P	S	N	N	F	T	S	M	E	T	.	N	L	P	Q	Q	V	C	W	C	S	P	L	L	K	I	G	K	E	G	L	P	V	P	F	K	R	S	L	I	E	Y	L	N	S	Y	.	H	L	K	D	I	D	E	L	I	T	K	S	V	E
Template Known Secondary structure		B										T	T	S								S	S		B	S					.		S	S	B																S														T	T	.									T
Template Predicted Secondary structure																															.																																				.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.								.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Query Sequence		P	F	E	Q	A	S	G	H	T	I	H	T	I	A	S	G	P	G	F	P	E	D	L	I	H	Q	A	L	L	T	A	A	Y	S	A	R	E	Y	L	I	M	T	T	P	Y	F	V	P	.	.	.	.	.	.	.	S	D	D	L	L	H	A	I	C	T	A	A	Q	R	G	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																		.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	N	F	A	P	L	S	E	L	E	F	V	Y	S	T	P	S	K	F	Q	S	S	G	L	L	S	F	Y	N	K	L	E	K	L	T	A	K	H	Y	L	C	Q	T	S	S	I	G	T	S	L	S	R	A	R	D	E	N	L	W	T	H	L	M	I	P	L	F	T	G	I	M	S	P	I	L	P	T	N	S
Template Known Secondary structure		T				G	G	G	T	T										T	T	S																								S	B	B				S		S	S	S								T							T	S	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
											362	.	.	.	.	.	.	.	370	.	.	.	.	.													.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.										.	400	.	.	.		.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.						.							.
Query SS confidence		.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.						.							.
Query Sequence		.	.	.	.	.	.	.	.	.	V	D	V	S	I	I	L	P	R	K	N	D	S	M	.	.	.	.	.	.	.	.	.	.	.	.	L	V	G	W	A	S	R	A	F	F	T	E	L	L	A	A	G	V	K	I	Y	Q	F	.	.	.	.	.	.	.	.	.	E	G	G	L	L	.	H	T	K	S	V	L	.
Query Conservation		.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.						.							.
Alig confidence		.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.						.							.
Template Conservation
Template Sequence		L	I	N	E	Y	S	Q	R	K	I	K	P	Y	I	I	F	P	T	E	Q	E	F	V	T	S	P	L	K	W	S	S	S	G	W	F	H	F	Q	Y	L	Q	K	K	S	Y	Y	E	M	L	R	N	K	F	K	V	F	Y	K	Q	D	P	A	M	V	T	R	R	R	G	T	T	P	A	H	S	K	F	Y	M	H
Template Known Secondary structure										T									B	S	G	G	G	T	T	S	T	T	G	G	G	G	G	G	G		B				G	G	G										T	S								T	T	T	S		T	T	T	T	T			B
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		410	.	.					.	.	.	.	.	.	.	420	.	.	.	.	.	.	.							.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.																.	.	.	.	.	.
Query SS confidence					.	.	.	.																.	.	.	.	.	.
Query Sequence		V	D	G	.	.	.	.	E	L	S	L	V	G	T	V	N	L	D	M	R	S	L	.	.	.	.	.	.	W	L	N	F	E	I	T	L	A	I
Query Conservation					.	.	.	.																.	.	.	.	.	.
Alig confidence					.	.	.	.																.	.	.	.	.	.
Template Conservation
Template Sequence		C	A	T	F	K	E	L	E	W	C	L	Y	T	S	A	N	L	S	Q	T	A	W	G	T	V	S	R	K	P	R	N	Y	E	A	G	V	L	Y
Template Known Secondary structure									S						S			B	S							S	S	S			S	S	B
Template Predicted Secondary structure
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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