Job Description P0AEW1 Confidence 20.66% Date Thu Jan 5 11:24:24 GMT 2012 Rank 2 Aligned Residues 183 % Identity 14% Template c3rkoN_ PDB info PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.																	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	K	S	Y	R	L	S	C	G	F	Y	A	C	Q	S	L	V	L	V	S	I	F	A	T	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	L	F	A	A	E	Q	L	L	I	W	S	A	S	A	F	I	T	K	V	L	L	V	P	L	I	M	T	Y	A	A	R	N	I	P	Q	N	I
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.
Template Sequence		K	R	S	L	E	A	S	I	K	Y	T	I	L	S	A	A	A	S	S	F	L	L	F	G	M	A	L	V	Y	A	Q	S	G	D	L	S	F	V	A	L	G	K	N	E	P	L	L	L	A	G	F	G	L	M	I	V	G	L	G	F	K	L	S	L	V	P	F	H	.	.	.	.	.	.	.	.	L	W	T	P
Template Known Secondary structure																																	S	S			S	S	S		S																							T		T	T	S		.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.									.	.	220	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.							.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																								.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.
Query Sequence		P	E	K	A	L	F	G	P	A	M	M	A	L	L	A	A	L	I	V	L	L	C	A	F	V	V	Q	P	V	K	L	P	M	A	T	G	L	K	.	.	.	.	.	.	P	A	L	A	V	A	L	G	H	F	L	L	G	L	L	C	I	V	S	Q	R	N	I	L	R	Q	I	F	G	Y	C	L	M	E	N	G
Query Conservation																																								.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.																		.	.
Template Conservation																																																															.	.
Template Sequence		D	V	Y	Q	G	A	P	A	P	V	S	T	F	L	A	T	A	S	K	I	A	I	F	G	V	V	M	R	L	F	L	Y	A	P	V	G	D	S	E	A	I	R	V	V	L	A	I	I	A	F	A	S	I	I	F	G	N	L	M	A	L	.	.	S	Q	T	N	I	K	R	L	L	G	Y	S	S	I	S	H	L
Template Known Secondary structure							S										T																		G	G	G	G		S																							.	.	T			B
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		S	H	L	V	L	A	L	L	A	W	R	A	P	E	L	V	E	I	G	I	A	T	D	A	I	F	A	V	I	V	M	V	L	L	A	R	.	.	.	K	I	W	R	T	H	G	T	L	D	V	N	N	L	T	A	L	K	G
Query Conservation																																						.	.	.
Alig confidence																																						.	.	.
Template Conservation
Template Sequence		G	Y	L	L	V	A	L	I	A	L	Q	T	G	E	M	S	M	E	A	V	G	V	Y	L	A	G	Y	L	F	S	S	L	G	A	F	G	V	V	S	L	M	S	S	P	Y	R	G	P	D	A	D	S	L	F	S	Y	R	G
Template Known Secondary structure										T	S	S	S		S																														S			S	S				B	G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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