Job Description P04968 Confidence 100.00% Date Wed Jan 25 15:20:11 GMT 2012 Rank 26 Aligned Residues 297 % Identity 18% Template d1wkva1 SCOP info Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Resolution 2.00

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.																							.
Query SS confidence																																																										.																							.
Query Sequence		A	D	S	Q	P	L	S	G	A	P	E	G	A	E	Y	L	R	A	V	L	R	A	P	V	Y	E	A	A	Q	V	T	P	L	Q	K	M	E	K	L	S	S	R	L	D	N	V	I	L	V	K	R	E	D	R	Q	P	.	V	H	S	F	K	L	R	G	A	Y	A	M	M	A	G	L	T	E	E	Q	K	A	.
Query Conservation																																																										.																							.
Alig confidence									.											.	.	.	.	.	.	.	.	.																.														.																							.
Template Conservation									.											.	.	.	.	.	.	.	.	.																.
Template Sequence		S	V	P	G	E	M	V	.	F	P	S	P	L	D	F	F	E	R	.	.	.	.	.	.	.	.	.	G	K	P	T	P	L	V	R	S	R	L	Q	L	P	N	.	G	V	R	V	W	L	K	L	E	W	Y	N	P	F	S	L	S	V	K	D	R	P	A	V	E	I	I	S	R	L	S	R	R	V	E	K	G
Template Known Secondary structure			S		T	T			.		S	S								.	.	.	.	.	.	.	.	.	S		S											S	T	.	T								G	G	G	S	T	T	T	S	B	T	T												T	T	T	S		T	T
Template Predicted Secondary structure									.											.	.	.	.	.	.	.	.	.																.
Template SS confidence
		77	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.										.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		H	G	V	I	T	A	S	A	G	N	H	A	Q	G	V	A	F	S	S	A	R	L	G	V	K	A	L	I	V	M	P	T	A	T	A	D	I	K	V	D	A	V	R	G	F	G	G	E	V	L	L	H	G	A	N	.	.	F	D	E	A	K	A	K	A	I	E	L	S	Q	Q	Q	G	F	T	W	V	P	P	F
Query Conservation																																																									.	.
Alig confidence																																																									.	.
Template Conservation
Template Sequence		S	L	V	A	D	A	T	S	S	N	F	G	V	A	L	S	A	V	A	R	L	Y	G	Y	R	A	R	V	Y	L	P	G	A	A	E	E	F	G	K	L	L	P	R	L	L	G	A	Q	V	I	V	D	P	E	A	P	S	T	V	H	L	L	P	R	V	M	K	D	S	K	N	E	G	F	V	H	V	N	Q	F
Template Known Secondary structure																							T	T									T	T	S											T	T							T	T		S	S	S	G	G	G																		T	T
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		158	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure						.																		.	.	.	.
Query SS confidence						.																		.	.	.	.
Query Sequence		D	H	P	M	.	V	I	A	G	Q	G	T	L	A	L	E	L	L	Q	Q	D	A	.	.	.	.	H	L	D	R	V	F	V	P	V	G	G	G	G	L	A	A	G	V	A	V	L	I	K	Q	L	M	P	Q	I	K	V	I	A	V	E	A	E	D	S	A	C	L	K	A	A	L	D	A	G	H	P	V	D	L
Query Conservation						.																		.	.	.	.
Alig confidence						.																		.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	N	D	A	N	F	E	A	H	M	R	G	T	A	R	E	I	F	V	Q	S	R	R	G	G	L	A	L	R	G	V	A	G	S	L	G	T	S	G	H	M	S	A	A	A	F	Y	L	Q	S	V	D	P	S	I	R	A	V	L	V	Q	P	A	Q	G	D	S	I	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T											T												T	T											S	S	S															T	T										T	T				.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	V	G	L	F	A	E	G	V	A	V	K	R	I	G	D	E	T	F	R	L	C	Q	E	Y	L	D	D	I	I	T	V	D	S	D	A	I	C	A	A	M	K	D	L	F	E	D	V	R	A	V	A	E	P	S	G	A	L	A	L	A	G	M	K	K	Y	I	A	L	H	N	I	R	G	E	R	L	A	H
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.
Template Sequence		P	G	I	R	R	V	E	T	G	M	L	.	.	.	.	.	.	.	.	W	I	N	M	L	D	I	S	Y	T	L	A	E	V	T	L	E	E	A	M	E	A	V	V	E	V	A	R	S	D	G	L	V	I	G	P	S	G	G	A	A	V	K	A	L	A	K	K	A	A	E	G	D	L	E	P	G	D	Y	V	V
Template Known Secondary structure		T	T				G	G	G			S	.	.	.	.	.	.	.	.					S																										S			B																	T	T		S		S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.									.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		313	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		I	L	S	G	.	A	N	V	N	F	H	G	L	R	Y	V	S	E
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		V	V	P	D	T	G	F	K	Y	L	S	L	V	Q	N	A	L	E
Template Known Secondary structure					B	B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions