Job Description P04968 Confidence 45.11% Date Wed Jan 25 15:20:11 GMT 2012 Rank 135 Aligned Residues 158 % Identity 19% Template c3h75A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens Resolution 1.60 Å

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		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.																		.	120	.	.	.	.	.	.
Predicted Secondary structure																					.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query SS confidence																					.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query Sequence		Y	A	M	M	A	G	L	T	E	E	Q	K	A	H	G	V	I	T	A	.	S	A	G	N	H	A	Q	G	V	A	F	S	S	A	R	L	G	V	K	A	L	I	V	M	P	T	A	T	A	D	I	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	V	R	G	F	G	G	.	.
Query Conservation																					.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Alig confidence																					.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation
Template Sequence		L	Q	Q	A	R	E	L	F	Q	G	R	D	K	P	D	Y	L	X	L	V	N	E	Q	Y	V	A	P	Q	I	L	R	L	S	Q	G	S	G	I	K	L	F	I	V	N	S	P	L	T	L	D	Q	R	W	I	G	S	X	V	G	D	D	E	E	A	G	Y	R	X	L	K	E	L	L	H	K	L	G	P	V	P
Template Known Secondary structure											S	S	S			S								S	S										T	T	S									S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
							127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.							.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																			.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																			.	.	.	.	.	.
Query Sequence		.	.	.	.	.	E	V	L	L	H	G	A	N	F	D	E	A	K	A	K	A	I	E	.	.	.	.	.	.	L	S	Q	Q	Q	G	F	T	W	V	P	P	F	D	H	P	M	V	I	A	G	Q	G	T	L	A	L	E	L	L	Q	Q	D	A	H	L	D	R	V	F	V	P	V	G	G	G	G	L	A	A	G
Query Conservation		.	.	.	.	.																			.	.	.	.	.	.
Alig confidence		.	.	.	.	.																			.	.	.	.	.	.																																									.	.
Template Conservation																																																																							.	.
Template Sequence		A	G	H	G	I	E	L	L	A	F	S	G	L	K	V	T	P	A	A	Q	L	R	E	R	G	L	R	R	A	L	A	E	H	P	Q	V	H	L	R	Q	L	V	Y	G	E	W	N	R	E	R	A	Y	R	Q	A	Q	Q	L	L	K	R	Y	P	K	T	Q	L	V	W	.	.	S	A	N	D	E	X	A	L	G
Template Known Secondary structure		S	S										S		T	T	S																		T	T										T	T																	T	T						.	.		S	S
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.
		196	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence		V	A	V	L	I	K	Q	L	M	.	.	.	.	P	Q	I	K	V	I	A	V	E	A	E	D	S	A	C	L	K	A	A	L	D	A	G	H
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.												.	.
Template Conservation																										.	.
Template Sequence		A	X	Q	A	A	R	E	L	G	R	K	P	G	T	D	L	L	F	S	G	V	N	S	S	.	.	P	E	A	L	Q	A	L	I	D	G	K
Template Known Secondary structure									T	T			B	T	T	T	B						S			.	.										T	S
Template Predicted Secondary structure																										.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions