Phyre 2 alignment of P04968 with c2zsjB

Job Description P04968
Confidence 100.00% Date Wed Jan 25 15:20:11 GMT 2012

Rank 24 Aligned Residues 306

% Identity 25% Template c2zsjB_

PDB info PDB header:lyase Chain: B: PDB Molecule:threonine synthase; PDBTitle: crystal structure of threonine synthase from aquifex aeolicus vf5

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence	L	R	A	P	V	Y	E	A	A	Q	V	T	P	L	Q	K	M	E	K	L	S	S	R	L	D	N	.	.	V	I	L	V	K	R	E	D	R	Q	P	V	H	S	F	K	L	R	G	A	Y	A	M	M	A	G	L	T	E	E	Q	K	A	H	G	V	I	T	A	S	A	G	N	H	A	Q	G	V	A	F	S	S
Query Conservation																											.	.
Alig confidence																											.	.																																	.
Template Conservation																																																													.
Template Sequence	N	T	P	I	V	T	L	Y	E	G	N	T	P	L	I	E	A	D	N	L	A	R	A	I	G	F	K	G	K	I	Y	L	K	Y	E	G	L	N	P	T	G	S	F	K	D	R	G	M	T	L	A	I	S	K	A	V	E	A	G	K	.	R	A	V	I	C	A	S	T	G	N	T	S	A	S	A	A	A	Y	A
Template Known Secondary structure	T	S																							T		S	S							G	G	G	S	T	T	S	B	T															T	T		.	S							S	S
Template Predicted Secondary structure																																																													.
Template SS confidence
	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.

	99	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence	A	R	L	G	V	K	A	L	I	V	M	P	T	A	T	.	A	D	I	K	V	D	A	V	R	G	F	G	G	E	V	L	L	H	G	A	N	F	D	E	A	K	A	K	A	I	E	L	S	Q	Q	Q	G	F	T	W	V	P	P	F	D	H	P	M	V	I	A	G	Q	G	T	L	A	L	E	L	L	Q	Q	D
Query Conservation																.
Alig confidence																.																																													.
Template Conservation																																																													.
Template Sequence	A	R	A	G	L	R	A	Y	V	L	L	P	K	G	A	V	A	I	G	K	L	S	Q	A	M	I	Y	G	A	K	V	L	A	I	Q	G	T	F	D	D	A	L	N	I	V	R	K	I	G	E	N	F	P	V	E	I	V	N	S	V	.	N	P	Y	R	I	E	G	Q	K	T	A	A	F	E	I	C	D	T	L
Template Known Secondary structure			T	T									T	T	T			G	G	G	T						T	T							S	S																S	S					S	T	T	.		T							T
Template Predicted Secondary structure																																																													.
Template SS confidence
	99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

	178	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.							.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure			.																												.	.	.	.	.	.
Query SS confidence			.																												.	.	.	.	.	.
Query Sequence	A	H	.	L	D	R	V	F	V	P	V	G	G	G	G	L	A	A	G	V	A	V	L	I	K	Q	L	M	P	Q	.	.	.	.	.	.	I	K	V	I	A	V	E	A	E	D	S	A	C	L	K	A	A	L	D	A	G	H	P	V	D	L	P	R	V	G	L	F	A	E	G	V	A	V	K	R	I	G	D	E
Query Conservation			.																												.	.	.	.	.	.
Alig confidence			.																												.	.	.	.	.	.																													.	.	.	.
Template Conservation																																																																	.	.	.	.
Template Sequence	G	E	A	P	D	Y	H	F	I	P	V	G	N	A	G	N	I	T	A	Y	W	K	G	F	K	I	Y	Y	E	E	G	K	I	T	K	L	P	R	M	M	G	W	Q	A	E	G	A	A	P	I	V	K	G	Y	P	I	K	N	P	Q	T	I	A	T	.	.	.	.	A	I	K	I	G	N	P	Y	S	W	K	S
Template Known Secondary structure	S	S			S							S	S	S																T	T	S		S	S										G	G	G						T	S			S	S				S		G	.	.	.	.	G	G			S	S		T	T
Template Predicted Secondary structure																																																																	.	.	.	.
Template SS confidence
	178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.

	251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.												.
Query SS confidence																																																								.												.
Query Sequence	T	F	R	L	C	Q	E	Y	L	D	D	I	I	T	V	D	S	D	A	I	C	A	A	M	K	D	L	F	E	D	V	R	A	V	A	E	P	S	G	A	L	A	L	A	G	M	K	K	Y	I	A	L	H	N	I	.	R	G	E	R	L	A	H	I	L	S	G	.	A	N	V	N	F	H	G	L	R	Y	V	S
Query Conservation																																																								.												.
Alig confidence																																																								.												.
Template Conservation
Template Sequence	A	L	K	A	A	Q	E	S	G	G	K	I	D	A	V	S	D	S	E	I	L	Y	A	Y	K	L	I	A	S	T	E	G	V	F	C	E	P	A	S	A	A	S	V	A	G	L	I	K	L	V	R	E	G	F	F	K	G	G	E	V	V	T	C	T	L	T	G	N	G	L	K	D	P	D	T	A	I	K	V	C
Template Known Secondary structure									T																										B		G	G	G	G												T	T				S										B	B	G	G	G								T
Template Predicted Secondary structure
Template SS confidence
	254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

	329	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	R	C	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence	E	E	P	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	334	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions