Job Description P04968 Confidence 38.71% Date Wed Jan 25 15:20:11 GMT 2012 Rank 161 Aligned Residues 60 % Identity 22% Template c2y3mA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:protein transport protein hofq; PDBTitle: structure of the extra-membranous domain of the secretin2 hofq from actinobacillus actinomycetemcomitans Resolution 2.30 Å

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		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	L	Y	S	F	E	F	P	E	S	P	G	A	L	L	R	F	L	N	T	L	G	T	Y	W	N	I	S	L	F	H	Y	R	S	H	G	T	D	Y	G	R	V	L	A	A	F	E	L	G	D	H	E	P	D	F	E	T	R	L	N	E	L	G	Y	D	C	H	D	E
Query Conservation
Alig confidence														.	.																		.	.	.	.	.	.	.	.
Template Conservation														.	.																		.	.	.	.	.	.	.	.
Template Sequence		N	P	V	F	S	I	R	L	K	Q	A	P	.	.	L	V	P	T	L	Q	Q	L	A	L	A	H	N	T	N	L	I	.	.	.	.	.	.	.	.	I	D	T	V	S	L	Q	L	E	N	V	D	L	D	Q	L	F	R	S	V	A	K	I	K	Q	L	D	L	W	Q	E
Template Known Secondary structure														.	.								S				T	T					.	.	.	.	.	.	.	.											S														T
Template Predicted Secondary structure														.	.																		.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.									.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions