Job Description P04968 Confidence 24.10% Date Wed Jan 25 15:20:11 GMT 2012 Rank 245 Aligned Residues 158 % Identity 14% Template c2qvcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima Resolution 2.40 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.																			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	M	M	A	G	L	T	E	E	Q	K	A	H	G	V	I	T	A	S	A	G	N	H	A	Q	G	V	A	F	S	S	A	R	L	G	V	K	A	L	I	V	M	P	T	A	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	K	V	D	A	V	R	G	F	G	G	E	V	L
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	X	L	E	S	F	I	A	E	G	V	N	G	I	A	I	A	P	S	D	P	T	A	V	I	P	T	I	K	K	A	L	E	X	G	I	P	V	V	T	L	D	T	D	S	P	D	S	G	R	Y	V	Y	I	G	T	D	N	Y	Q	A	G	Y	T	A	G	L	I	X	K	E	L	L	G	G	K	G	K	V	V
Template Known Secondary structure										T	T		S							S	S	T	T	T	T										T	T							S	S			T	T	S			S																						T	T	T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		130	.	.	.	.						.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure							.	.	.	.	.
Query SS confidence							.	.	.	.	.
Query Sequence		L	H	G	A	N	.	.	.	.	.	F	D	E	A	K	A	K	A	I	E	L	S	Q	Q	Q	G	F	T	W	V	P	P	F	D	H	P	M	V	I	A	G	Q	G	T	L	A	L	E	L	L	Q	Q	D	A	H	L	D	R	V	F	V	P	V	G	G	G	G	L	A	A	G	V	A	V	L	I	K	Q	L	M
Query Conservation							.	.	.	.	.
Alig confidence							.	.	.	.	.																																																			.	.
Template Conservation																																																														.	.
Template Sequence		I	G	T	G	S	L	T	A	X	N	S	L	Q	R	I	Q	G	F	K	D	A	I	K	D	S	E	I	E	I	V	D	I	L	N	D	E	E	D	G	A	R	A	V	S	L	A	E	A	A	L	N	A	H	P	D	L	D	A	F	F	.	.	G	V	Y	A	Y	N	G	P	A	Q	A	L	V	V	K	N	A	G
Template Known Secondary structure					S		S	S	S													T	T	T	T	S											T	T																	T	T						.	.		S	S	T	T												T	T
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
				205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	P	Q	I	K	V	I	A	V	E	A	E	D	S	A	C	L	K	A	A	L	D	A	G	H	P
Query Conservation		.	.
Alig confidence		.	.												.	.
Template Conservation															.	.
Template Sequence		K	V	G	K	V	K	I	V	C	F	D	T	T	.	.	P	D	I	L	Q	Y	V	K	E	G	V	I
Template Known Secondary structure			T	T	T	S									.	.									T	T	S
Template Predicted Secondary structure															.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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