Phyre 2 alignment of P04968 with c2o2jA

Job Description P04968
Confidence 100.00% Date Wed Jan 25 15:20:11 GMT 2012

Rank 34 Aligned Residues 269

% Identity 25% Template c2o2jA_

PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: mycobacterium tuberculosis tryptophan synthase beta chain2 dimer (apoform)

Resolution 2.56 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence	A	E	Y	L	R	A	V	L	R	A	P	V	Y	E	A	A	Q	V	T	P	L	Q	K	M	E	K	L	S	S	R	L	D	.	N	V	I	L	V	K	R	E	D	R	Q	P	V	H	S	F	K	L	R	G	A	Y	A	M	M	A	G	L	T	E	E	Q	K	A	H	G	V	I	T	A	S	A	G	N	H	A	Q
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence	Q	D	F	L	D	D	L	D	R	L	Q	A	N	Y	A	G	R	P	S	P	L	Y	E	A	T	R	L	S	Q	H	A	G	S	A	R	I	F	L	K	R	E	D	L	N	H	T	G	S	H	K	I	N	N	V	L	G	Q	A	L	L	A	R	R	M	G	K	T	R	V	I	A	E	T	G	A	G	Q	H	G	V
Template Known Secondary structure												T	T	T	S	S		S							T	T	T	G	G	G	T	T	T								G	G	G			T	T																	T	T									S	S	S
Template Predicted Secondary structure
Template SS confidence
	52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.

	93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.								.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.																.	.	.																				.	.	.	.	.	.	.
Query SS confidence																										.	.	.																.	.	.																				.	.	.	.	.	.	.
Query Sequence	G	V	A	F	S	S	A	R	L	G	V	K	A	L	I	V	M	P	T	A	T	A	D	I	K	.	.	.	V	D	A	V	R	G	F	G	G	E	V	L	L	H	G	.	.	.	A	N	F	D	E	A	K	A	K	A	I	E	L	S	Q	Q	Q	G	F	.	.	.	.	.	.	.	T	W	V	P	P	F	D	H
Query Conservation																										.	.	.																.	.	.																				.	.	.	.	.	.	.
Alig confidence																										.	.	.																.	.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	T	A	T	A	C	A	L	L	G	L	D	C	V	I	Y	M	G	G	I	D	T	A	R	Q	A	L	N	V	A	R	M	R	L	L	G	A	E	V	V	A	V	Q	T	G	S	K	T	L	K	D	A	I	N	E	A	F	R	D	W	V	A	N	A	D	N	T	Y	Y	C	F	G	T	A	A	G	P	H	P	F
Template Known Secondary structure										T														S	S	T	T								T	T								S	S	S		S																T	T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
	132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.						.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure					.																.	.	.	.	.
Query SS confidence					.																.	.	.	.	.
Query Sequence	P	M	V	I	.	A	G	Q	G	T	L	A	L	E	L	L	Q	Q	D	A	.	.	.	.	.	H	L	D	R	V	F	V	P	V	G	G	G	G	L	A	A	G	V	A	V	L	I	K	Q	L	M	P	Q	I	K	V	I	A	V	E	A	E	D	S	A	C	L	K	A	A	L	D	A	G	H	P	V	D	L	P
Query Conservation					.																.	.	.	.	.
Alig confidence					.																.	.	.	.	.																									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	P	T	M	V	R	D	F	Q	R	I	I	G	M	E	A	R	V	Q	I	Q	G	Q	A	G	R	L	P	D	A	V	V	A	C	V	G	G	G	S	N	A	I	G	I	F	H	A	F	L	D	.	D	P	G	V	R	L	V	G	F	E	A	A	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							G	G	G															S	S			S							S	S		T	T	S	G	G	G	S	G	G	G	T	T	.		T	T	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.

	234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	V	G	L	F	A	E	G	V	A	V	K	R	I	G	D	E	T	F	R	L	C	Q	E	Y	L	D	D	I	I	T	V	D	S	D	A	I	C	A	A	M	K	D	L	F	E	D	V	R	A	V	A	E	P	S	G	A	L	A	L	A	G	M	K	K	Y	I	A	L	H	N	I	R	G	E	R	L	A	H	I
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	Y	R	P	I	T	D	S	E	A	M	D	A	F	G	L	L	C	R	M	E	G	I	I	P	A	I	E	S	A	H	A	V	A	G	A	L	K	L	G	V	E	L	G	.	R	G	A	V	I	V	V	N
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						S																								.	T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Template SS confidence
																											336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380		.	.	.	.	.	.	.	.

	314	.	.		.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence	L	S	G	.	A	N	V	N	F	H	G	L	R	Y
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence	L	S	G	R	G	D	K	D	V	E	T	A	A	K
Template Known Secondary structure			S		S	S	S
Template Predicted Secondary structure
Template SS confidence
	389	390	.	.	.	.	.	.	.	.	.	400	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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