Job Description P04968 Confidence 100.00% Date Wed Jan 25 15:20:11 GMT 2012 Rank 19 Aligned Residues 311 % Identity 21% Template c1x1qA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8 Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		17	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure															.																.
Query SS confidence															.																.
Query Sequence		L	R	A	V	L	R	A	P	V	Y	E	A	A	.	Q	V	T	P	L	Q	K	M	E	K	L	S	S	R	L	.	D	N	V	I	L	V	K	R	E	D	R	Q	P	V	H	S	F	K	L	R	G	A	Y	A	M	M	A	G	L	T	E	E	Q	K	A	H	G	V	I	T	A	S	A	G	N	H	A	Q	G	V
Query Conservation															.																.
Alig confidence															.																.
Template Conservation
Template Sequence		F	L	E	E	L	D	H	Y	L	R	Q	F	A	G	R	P	T	P	L	Y	H	A	K	R	L	S	E	Y	W	G	G	A	Q	V	F	L	K	R	E	D	L	L	H	T	G	A	H	K	I	N	N	T	L	G	Q	A	L	L	A	R	R	X	G	K	R	R	V	I	A	E	T	G	A	G	Q	H	G	V	S	V
Template Known Secondary structure													T	T			S														T	S	S							G	G	G	S	G	G	G	B	T	T															T									S	S	S
Template Predicted Secondary structure
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150								.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																.	.	.																									.	.	.																			.	.	.	.	.	.	.											.
Query SS confidence																.	.	.																									.	.	.																			.	.	.	.	.	.	.											.
Query Sequence		A	F	S	S	A	R	L	G	V	K	A	L	I	V	.	.	.	M	P	T	A	T	A	D	I	K	V	D	A	V	R	G	F	G	G	E	V	L	L	H	G	.	.	.	A	N	F	D	E	A	K	A	K	A	I	E	L	S	Q	Q	Q	G	.	.	.	.	.	.	.	F	T	W	V	P	P	F	D	H	P	.
Query Conservation																.	.	.																									.	.	.																			.	.	.	.	.	.	.											.
Alig confidence																.	.	.																									.	.	.																			.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		A	T	V	A	A	L	F	G	L	E	C	V	V	Y	X	G	E	E	D	V	R	R	Q	A	L	N	V	F	R	X	K	L	L	G	A	E	V	R	P	V	A	A	G	S	R	T	L	K	D	A	T	N	E	A	I	R	D	W	I	T	N	V	R	T	T	F	Y	I	L	G	S	V	V	G	P	H	P	Y	P	X
Template Known Secondary structure									T														T											T	T								S	T	T	S	S															T	T	T	T								S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.						.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																			.	.	.	.	.																											.														.	.	.	.
Query SS confidence																			.	.	.	.	.																											.														.	.	.	.
Query Sequence		M	V	I	A	G	Q	G	T	L	A	L	E	L	L	Q	Q	D	.	.	.	.	.	A	H	L	D	R	V	F	V	P	V	G	G	G	G	L	A	A	G	V	A	V	L	I	K	Q	L	.	M	P	Q	I	K	V	I	A	V	E	A	E	D	.	.	.	.	S	A	C	L	K	A	A	L	D	A	G	H	P	V
Query Conservation																			.	.	.	.	.																											.														.	.	.	.
Alig confidence																			.	.	.	.	.																											.														.	.	.	.
Template Conservation
Template Sequence		X	V	R	D	F	Q	S	V	I	G	E	E	V	K	R	Q	S	L	E	L	F	G	R	L	P	D	A	L	I	A	A	V	G	G	G	S	N	A	I	G	L	F	A	P	F	A	Y	L	P	E	G	R	P	K	L	I	G	V	E	A	A	G	E	G	L	S	T	G	R	H	A	A	S	I	G	A	G	K	R	G
Template Known Secondary structure								T															S	S			S							S	S	S	S											T	S		T	T												T	T	S	S	S										T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	P	R	V	G	L	F	A	E	G	V	A	V	K	R	I	G	D	E	T	F	R	L	C	Q	E	Y	L	D	D	I	I	T	V	D	S	D	A	I	C	A	A	M	K	D	L	F	E	D	V	R	A	V	A	E	P	S	G	A	L	A	L	A	G	M	K	K	Y	I	A	L	H	N	I	R	G	E	R	L
Query Conservation
Alig confidence									.																																																																			.
Template Conservation									.																																																																			.
Template Sequence		V	L	H	G	S	Y	X	.	Y	L	L	Y	D	Y	P	G	V	G	P	E	H	S	Y	Y	A	D	A	G	V	A	E	Y	A	S	V	T	D	E	E	A	L	E	G	F	K	L	L	A	R	L	E	G	I	I	P	A	L	E	S	A	H	A	I	A	Y	A	A	K	V	V	P	E	X	D	.	K	D	Q	V	V
Template Known Secondary structure				T	T				.		B					S	B												T	S																							S			B															T	T	T	S		.	T	T
Template Predicted Secondary structure									.																																																																			.
Template SS confidence
		302	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.	.	.	.	.
		311	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		A	H	I	L	S	G	.	A	N	V	N	F	H	G	L	R	Y	V	S	E
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		V	I	N	L	S	G	R	G	D	K	D	V	T	E	V	X	R	L	L	G
Template Known Secondary structure							B	B	G	G	G	T							T
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions