Job Description P04968 Confidence 97.56% Date Wed Jan 25 15:20:11 GMT 2012 Rank 43 Aligned Residues 150 % Identity 7% Template c1u8sB_ PDB info PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor Resolution 2.45 Å

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		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.			360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		Q	R	E	A	L	L	A	V	T	I	P	E	E	K	G	S	F	L	K	F	C	Q	L	L	.	.	G	G	R	S	V	T	E	F	N	Y	R	F	A	D	A	K	N	A	C	I	F	V	G	V	R	L	S	R	G	L	E	E	R	K	E	I	L	Q	M	L	N	D	G	G	Y	S	V	V	D	L	S	D	D	E
Query Conservation																										.	.
Alig confidence																										.	.														.	.	.																										.	.	.	.	.	.	.
Template Conservation																																									.	.	.																										.	.	.	.	.	.	.
Template Sequence		T	Q	H	L	V	I	T	A	V	G	T	D	R	P	G	I	C	N	E	V	V	R	L	V	T	Q	A	G	C	N	I	I	D	S	R	I	A	M	F	.	.	.	G	K	E	F	T	L	L	M	L	I	S	G	S	P	S	N	I	T	R	V	E	T	T	L	P	.	.	.	.	.	.	.	L	L	G	Q	Q	H
Template Known Secondary structure															T	T											T	T	T												.	.	.	T	T																								.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure																																									.	.	.																										.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.								.	.	70	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.		.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.			.	.	.	.	490
Predicted Secondary structure																																														.																													.	.
Query SS confidence																																														.																													.	.
Query Sequence		M	A	K	L	H	V	R	Y	M	V	G	G	R	P	S	H	P	L	Q	E	R	L	Y	S	F	E	F	P	E	S	P	G	A	L	L	R	F	L	N	T	L	G	T	Y	.	W	N	I	S	L	F	H	Y	R	S	H	G	T	D	Y	G	R	V	L	A	A	F	E	L	G	D	H	E	.	.	P	D	F	E	T
Query Conservation																																														.																													.	.
Alig confidence																																														.																													.	.
Template Conservation
Template Sequence		D	L	I	T	M	M	K	R	T	S	P	H	D	H	Q	T	H	A	Y	T	V	E	V	Y	V	E	S	D	D	K	L	G	L	T	E	K	F	T	Q	F	F	A	Q	R	Q	I	G	M	A	S	L	S	A	Q	T	I	S	K	N	Q	F	H	I	A	I	S	A	R	V	D	S	G	C	N	L	M	Q	L	Q	E
Template Known Secondary structure		T																	S										S			T	T	T											T	T																										T	T	S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		491	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	N	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	D	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions