Return to main results Retrieve Phyre Job Id

Job DescriptionP04968
Confidence24.53%DateWed Jan 25 15:20:11 GMT 2012
Rank236Aligned Residues99
% Identity10%Templatec1gdhA_
PDB info PDB header:oxidoreductase(choh (d)-nad(p)+ (a))Chain: A: PDB Molecule:d-glycerate dehydrogenase; PDBTitle: crystal structure of a nad-dependent d-glycerate2 dehydrogenase at 2.4 angstroms resolution
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   78.80.........90.........100.........110.........120.........130.........140.........150.......
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  KAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPF
Query Conservation     


 






 


 

  


   



   
  
   
   

 

  
   


   
   
   
   
 

Alig confidence 

















































.............














..
Template Conservation   

 




 
 

  

  
 


  
                      ............. 
 


  



   ..
Template Sequence  DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHD. . . . . . . . . . . . . SLDSLLSVSQFFSLN. .
Template Known Secondary structure  TT


STTT

SS


T

S.............S
S
..
Template Predicted Secondary structure 




















.............




..
Template SS confidence 















































































   146...150.........160.........170.........180.........190..... ....200.........210
 
   158.160.........170.........180.........190...
Predicted Secondary structure 










Query SS confidence 



































Query Sequence  DHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLA
Query Conservation 
 
  


 



 




    
 










Alig confidence  .




















.












Template Conservation  . 


  
  

    
  

 .

 


 


 

Template Sequence  . APSTPETRYFFNKATIKSLPQ. GAIVVNTARGDLV
Template Known Secondary structure  .



TTTTT
BSTTS
T.T
S
GGGB
Template Predicted Secondary structure  .














.







Template SS confidence 



































   211........220.........230. ........240....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions