Job Description P37634 Confidence 91.44% Date Thu Jan 5 11:56:05 GMT 2012 Rank 58 Aligned Residues 142 % Identity 13% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		99	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																.	.																						.	.	.	.	.	.
Query SS confidence																.	.																						.	.	.	.	.	.
Query Sequence		G	S	P	L	I	A	R	L	L	L	R	E	Q	D	.	.	S	L	Q	L	T	E	L	H	P	S	D	Y	P	L	L	R	S	E	F	Q	K	.	.	.	.	.	.	D	S	R	A	R	V	E	K	A	D	G	F	Q	Q	L	K	A	K	L	P	P	V	S	R	R	G	L	I	L	I	D	P	P	Y	E	M	K
Query Conservation																.	.																						.	.	.	.	.	.
Alig confidence																.	.																						.	.	.	.	.	.																		.	.
Template Conservation																																																														.	.
Template Sequence		G	D	G	G	V	L	R	E	V	A	R	H	A	S	I	E	Q	I	D	X	C	E	I	D	K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	G	Y	E	D	P	R	V	N	L	V	I	G	D	G	V	A	F	L	K	N	.	.	A	A	E	G	S	Y	D	A	V	I	V	D	S	S	D	P	I	G
Template Known Secondary structure		S	S	S							T	T		T	T																						T	T	T	G	G	G	T	T		T	T						S								S	.	.	S		S	S												S	S	S
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		171	.	.					.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure					.	.	.	.																								.	.
Query SS confidence					.	.	.	.																								.	.
Query Sequence		T	D	Y	.	.	.	.	Q	A	V	V	S	G	I	A	E	G	Y	K	R	F	A	T	G	I	Y	A	L	W	Y	.	.	P	V	V	L	R	Q	Q	I	K	R	M	I	H	D	L	E	A	T	G	I	R	K	I	L	Q	I	E	L	A	V	L	P	D	S	D	R	R	G	M	T	A	S	G	M	I	V	I	N
Query Conservation					.	.	.	.																								.	.
Alig confidence					.	.	.	.													.	.										.	.																															.	.
Template Conservation																					.	.																																										.	.
Template Sequence		P	A	K	E	L	F	E	K	P	F	F	Q	S	V	A	R	A	L	R	.	.	P	G	G	V	V	C	T	Q	A	E	S	L	W	L	H	X	D	I	I	E	D	I	V	S	N	C	R	E	I	F	K	G	S	V	N	Y	A	W	T	S	V	.	.	P	T	Y	P	S	G	V	I	G	F	X	L	C	S	T	E
Template Known Secondary structure		G	G	G	G	G	G	S													.	.												T	T	T																	S	S										.	.	T	T	S	G	G	G										S
Template Predicted Secondary structure																					.	.																																										.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		245	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		284	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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