Job Description P27837 Confidence 96.09% Date Thu Jan 5 11:44:14 GMT 2012 Rank 8 Aligned Residues 337 % Identity 8% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.						.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.									.	.	.	.	.
Query SS confidence																										.									.	.	.	.	.
Query Sequence		L	L	A	Y	I	I	A	G	L	F	V	F	F	I	M	R	S	M	G	E	M	L	F	L	.	E	P	V	T	G	S	F	A	.	.	.	.	.	V	Y	A	H	R	Y	M	S	P	F	F	G	Y	L	T	A	W	S	Y	W	F	M	W	M	A	V	G	I	S	E	I	T	A	I	G	V	Y	V	Q	F	W	F
Query Conservation																										.									.	.	.	.	.
Alig confidence																										.									.	.	.	.	.
Template Conservation
Template Sequence		P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F
Template Known Secondary structure																					T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S																																	T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.						.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190
Predicted Secondary structure																										.	.	.	.	.																																													.	.	.	.
Query SS confidence																										.	.	.	.	.																																													.	.	.	.
Query Sequence		P	E	M	A	Q	W	I	P	A	L	I	A	V	A	L	V	A	L	A	N	L	A	A	V	.	.	.	.	.	R	L	Y	G	E	I	E	F	W	F	A	M	I	K	V	T	T	I	I	V	M	I	V	I	G	L	G	V	I	F	F	G	F	G	N	G	G	Q	S	I	G	F	S	N	.	.	.	.	L	T	E
Query Conservation																										.	.	.	.	.																																													.	.	.	.
Alig confidence																										.	.	.	.	.																																													.	.	.	.
Template Conservation
Template Sequence		G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y
Template Known Secondary structure		T				T																				S	S				T	T																																																T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.										.	260	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.
Query Sequence		H	G	G	F	F	A	G	G	W	K	G	F	L	T	A	L	C	I	V	V	A	S	Y	Q	G	V	E	L	I	G	I	T	A	G	E	A	K	N	P	Q	V	T	L	R	S	A	V	G	K	V	L	W	R	I	L	I	F	Y	V	G	A	I	F	V	I	V	T	I	.	.	.	.	.	.	.	.	.	F	P	W
Query Conservation																																																																						.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.																													.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.
Template Sequence		T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	G	.	.	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I
Template Known Secondary structure					S	S								T											T											T		S	S	.	.																																			T	T	S
Template Predicted Secondary structure																																								.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	I	G	S	N	G	S	P	F	V	L	T	F	A	K	I	G	I	T	A	A	A	G	I	I	N	F	V	V	L	T	A	A	L	S	G	C	N	S	G	M	Y	S	C	G	R	M	L	Y	A	L	A	K	N	R	Q	L	P	A	A	M	A	K	V	S	R	H	G	V	P	V	A	G	V	A	V	S	I	A
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.
Template Sequence		P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	.	.	.	.	.	.	.	.	R	E	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S
Template Known Secondary structure						G	G	G												T	S	S	S	T	T																												T	T	S	.	.	.	.	.	.	.	.		S	S	S	S	S		S	S		S	T	T
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.									.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	L	I	G	S	C	L	N	Y	I	I	P	N	P	Q	R	V	F	V	Y	V	Y	S	A	S	V	L	P	G	M	V	P	W	F	V	I	L	I	S	Q	L	R	F	R	R	A	H	K	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	V	G	I	I	G	I	V	L	L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K	D
Template Known Secondary structure																S	S																																T
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions