Job Description P27837 Confidence 100.00% Date Thu Jan 5 11:44:14 GMT 2012 Rank 1 Aligned Residues 427 % Identity 15% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		Q	R	G	L	E	A	R	H	I	E	L	I	A	L	G	G	T	I	G	V	G	L	F	M	G	A	A	S	T	L	K	W	A	G	P	S	V	L	L	A	Y	I	I	A	G	L	F	V	F	F	I	M	R	S	M	G	E	M	L	F	L	E	P	V	T	G	S	F	A	V	Y	A	H	R	Y	M	S	P	.	F
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	V	S	N	A	G	P	I	A	F	I	H	K	A	I	G	D	N	I
Template Known Secondary structure					B																		T	T	T	S									G	G	G																								T	T				T	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		F	G	Y	L	T	A	W	S	Y	W	F	M	W	M	A	V	G	I	S	E	I	T	A	I	G	V	Y	V	Q	F	W	F	P	E	M	A	Q	W	I	P	A	.	L	I	A	V	A	L	V	A	L	A	N	L	A	A	V	R	L	Y	G	E	I	E	F	W	F	A	M	I	K	V	T	T	I	I	V	M	I	V
Query Conservation																																											.
Alig confidence																																											.
Template Conservation
Template Sequence		I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L	L	I	L	G	L
Template Known Secondary structure																																	T	T																										T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	L	G	V	I	F	F	G	F	G	N	G	G	Q	S	I	G	F	S	N	L	T	E	H	G	G	F	F	A	G	G	W	K	G	F	L	T	A	L	C	I	V	V	A	S	Y	Q	G	V	E	L	I	G	I	T	A	G	E	A	K	N	P	Q	V	T	L	R	S	A	V	G	K	V	L	W	R	I	L	I
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	F	A	G	L	I	.	.	.	.	.	.	.	.	.	.	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I	L	I	V	M	F
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.				G	G	G	T	S				S														G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.											.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		F	Y	V	G	A	I	F	V	I	V	T	I	F	P	W	N	E	.	I	G	S	N	G	S	P	F	V	L	T	F	A	K	I	G	I	T	A	A	A	G	I	I	N	F	V	V	L	T	A	A	L	S	G	C	N	S	G	M	Y	S	C	G	R	M	L	Y	A	L	A	K	N	R	Q	L	P	A	A	M	A	K
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		V	Y	V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S	L	A	K	D	G	E	L	P	E	F	F	E	R
Template Known Secondary structure												T	T	S								T	G	G	G																																			T	T	T											S	S			S	S			T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	R	H	G	V	P	V	A	G	V	A	V	S	I	A	I	L	L	I	G	S	C	L	N	Y	I	I	P	N	P	Q	R	V	F	V	Y	V	Y	S	A	S	V	L	P	G	M	V	P	W	F	V	I	L	I	S	Q	L	R	F	R	R	A	H	K	A	A	I	A	S	H	P	F	R	S	I	L	F	P	W
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Sequence		K	V	W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	M	.	.	.	.	.	.	.	.	.	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	.	.	.	.	.	.	K	E	I	V	I	F	S
Template Known Secondary structure		T	S			S		T																	S			.	.	.	.	.	.	.	.	.																									T								.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340										.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.							.	.	.	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	Y	V	T	M	A	F	L	I	C	V	L	I	G	M	Y	F	N	E	D	T	R	M	S	L	F	V	G	I	I	F	M	L	A	V	T	A	I	Y	K	V	F	G	L	N	R	H	G	K	A	H	K	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	I	V	V	L	G	V	F	L	L	L	L	Y	Y	Q	W	I	T	N	R	F	V	F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I	I	Y	R	K	V	T	K	R	T	F	S	N	N	M	Y	V	K
Template Known Secondary structure																																																			G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.