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Job DescriptionP27837
Confidence100.00%DateThu Jan 5 11:44:14 GMT 2012
Rank3Aligned Residues441
% Identity9%Templatec2jlnA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40... ......50.........60.........70.........80.
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Query Sequence  DNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP. SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAH
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Template Sequence  APTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG. . INFTVAAR
Template Known Secondary structure  S


GGG

B

STTTTS
T
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TT
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   18.20.........30.........40.........50.........60.........70.........80....... ..90.....
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  RYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTI
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Template Conservation     
                   
         
                  
   
                 
     
Template Sequence  MPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVL
Template Known Secondary structure  TTS
TTTT



TT
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   96...100.........110.........120.........130.........140.........150.........160.........170.....
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  IVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVL
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Template Conservation      
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Template Sequence  LAMGVYMVYLMLDGA. . . DVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARY
Template Known Secondary structure  ...T

TT


SS

S
TTTTTTTTB


TT

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   176...180.........190 .........200.........210.........220.........230.........240.........250..
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
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Query Sequence  WRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPA
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Template Sequence  ATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPR
Template Known Secondary structure  S
S
T


TTTSTT
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   253......260.........270.........280.........290.........300.........310.........320.........330..
 
   322.......330.........340.........350.........360.........370.........380.........390... ......400
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Query Sequence  AMAKVSRHGVPVAGVAVSIAILLIGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAI. ASHPFRS
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Template Sequence  VFTFKT. . . . . . . . . . . GVIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRTKGIY
Template Known Secondary structure  T

...........T
GGGTTTTTSTT


TBSSSTT
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   333..... .340.........350.........360.........370.........380.........390.........400.
 
   401........410.........420.........430.........440.........450.........460.
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Query Sequence  ILFPWANYVTMAFLICVLIGMYFNEDTRMSLFVGIIFMLAVTAIYKVFGLNRHGKAHKLEE
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Template Sequence  TYWRGVNWVALAVYAVALAVSFLTPDLMF. . VTGLIAALLLHIPAMRWVAKTFPLFSEAES
Template Known Secondary structure 
TBTTB
T
GGG..TTTS
S

GGGG
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   402.......410.........420.........430 .........440.........450.........460
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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