Job Description P0AG16 Confidence 27.11% Date Thu Jan 5 11:27:50 GMT 2012 Rank 425 Aligned Residues 50 % Identity 24% Template c2p1nD_ PDB info PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase Resolution 2.50 Å

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		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.																							420	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	G	T	T	S	E	Q	I	I	E	M	A	R	E	A	G	A	K	K	V	Y	L	A	S	A	A	P	E	I	R	F	P	N	V	Y	G	I	D	M	P	S	A	T	E	L	I	A	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	E	V	D	E	I	R	Q
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	S	K	I	L	A	K	V	I	E	Y	C	K	R	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	D	A	D	F	M	K	I	D	Q	A	T	L	F	E	L	I	L	A	A	N	Y	L	N	I	K	N	L	L	D	L	T	C	Q	T	V	A	D	M	I	K	G	K	T	P	E	E	I	R	T
Template Known Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	T	T																		T																	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.															.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		429	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	G	A	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	F	N	I	K	N
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions