Job Description P69856 Confidence 91.43% Date Thu Jan 5 12:12:14 GMT 2012 Rank 27 Aligned Residues 169 % Identity 13% Template d2vdfa1 SCOP info Transmembrane beta-barrels OMPT-like Outer membrane adhesin/invasin OpcA Resolution 1.95

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.																				.	.
Query SS confidence																																															.	.	.																				.	.
Query Sequence		A	A	T	L	D	V	R	G	G	Y	R	S	G	S	H	A	Y	E	T	R	L	K	V	S	E	G	W	Q	N	G	W	W	A	S	M	E	S	N	T	W	N	T	I	H	D	.	.	.	N	K	K	E	N	A	A	L	N	D	V	Q	V	E	V	N	Y	A	I	.	.	K	L	D	D	Q	W	T	V	R	P	G
Query Conservation																																															.	.	.																				.	.
Alig confidence														.																																	.	.	.																				.	.
Template Conservation														.
Template Sequence		A	K	H	I	G	V	R	A	D	I	P	F	.	D	A	N	Q	G	I	R	L	E	A	G	F	G	R	S	K	K	N	I	I	N	L	E	T	D	E	N	K	L	G	K	T	K	N	V	K	L	P	T	G	V	P	E	N	R	I	D	L	Y	T	G	Y	T	Y	T	Q	T	L	S	D	S	L	N	F	R	V	G
Template Known Secondary structure													S	.	S	S	S																										T	S	S									S																				T	T
Template Predicted Secondary structure														.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		98	.	100	.	.	.	.	.																	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Query Sequence		M	L	T	H	F	S	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	.	.	.	.	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.											.	.	.	.	.	.						.
Template Conservation																																																									.	.	.	.	.	.						.
Template Sequence		A	G	L	G	F	E	S	S	K	D	S	I	L	H	S	S	R	Q	S	W	L	A	K	V	H	A	D	L	L	S	Q	L	G	N	G	W	Y	I	N	P	W	S	E	V	K	F	D	L	N	S	R	Y	K	L	N	.	.	.	.	.	.	T	D	I	N	Q	.	K	T	N	G	W	G	F	G	L	G	A	N	I
Template Known Secondary structure																																			T	T																					.	.	.	.	.	.						.
Template Predicted Secondary structure																																																									.	.	.	.	.	.						.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.							.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																	.	.
Query SS confidence													.	.																	.	.
Query Sequence		T	Y	H	I	N	S	D	F	T	F	A	.	.	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	.	.	H	K	K	W	A	T	E	N	A	F	V	L	Q	Y	H
Query Conservation													.	.																	.	.
Alig confidence													.	.																	.	.
Template Conservation
Template Sequence		G	K	K	L	G	A	S	I	E	A	G	P	F	Y	K	Q	R	T	Y	K	E	S	G	E	F	S	V	S	L	T	I	P	K	T	S	I	R	E	Y	G	L	R	V	G	I	K
Template Known Secondary structure																										B				B
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions