Job Description P69856 Confidence 56.77% Date Thu Jan 5 12:12:14 GMT 2012 Rank 40 Aligned Residues 158 % Identity 14% Template d2mpra_ SCOP info Transmembrane beta-barrels Porins Maltoporin-like Resolution 2.40

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		75	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.												.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure													.																							.	.	.	.	.	.	.	.	.	.	.																.																.	.	.	.
Query SS confidence													.																							.	.	.	.	.	.	.	.	.	.	.																.																.	.	.	.
Query Sequence		L	N	D	V	Q	V	E	V	N	Y	A	.	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	G	T	.	.	.	.	.	.	.	.	.	.	.	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	.	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	.	.	.	.
Query Conservation													.																							.	.	.	.	.	.	.	.	.	.	.																.																.	.	.	.
Alig confidence													.																							.	.	.	.	.	.	.	.	.	.	.																.																.	.	.	.
Template Conservation
Template Sequence		T	A	N	D	V	F	D	V	R	L	A	G	L	Q	T	N	P	D	G	V	L	E	L	G	V	D	Y	G	R	A	N	T	T	D	G	Y	K	L	A	D	G	A	S	K	D	G	W	M	F	T	A	E	H	T	Q	S	M	L	K	G	Y	N	K	F	V	V	Q	Y	A	T	D	A	M	T	T	Q	G	K	G	Q
Template Known Secondary structure																		T	T																T	T		B			T	T																	T	T												G	G	G	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
																138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	K	W	A	T	E	N	A	F	V	L	Q	Y	H	M	T	P	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.
Template Conservation																																																											.	.	.
Template Sequence		A	R	G	S	D	G	S	S	S	F	T	E	K	I	N	Y	A	N	K	V	I	N	N	N	G	N	M	W	R	I	L	D	H	G	A	I	S	L	G	D	K	W	D	L	M	Y	V	G	M	Y	Q	N	I	D	W	D	N	.	.	.	N	L	G	T	E	W	W	T	V	G	V	R	P	M	Y	K	W	T	P	I
Template Known Secondary structure				T	T	T	T																																	T	T	T															T	T	.	.	.	S																		T	T
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	P	Y	I	E	Y	D	Y	L	D	R	Q	G	V	Y	N	G	R	D	N	L	S	E	N	S	Y	R	I	G	V	S	F	K	L
Query Conservation
Alig confidence																					.	.	.
Template Conservation																					.	.	.
Template Sequence		M	S	T	L	L	E	V	G	Y	D	N	V	K	S	Q	Q	T	G	D	.	.	.	R	N	N	Q	Y	K	I	T	L	A	Q	Q	W
Template Known Secondary structure																T	T	T			.	.	.
Template Predicted Secondary structure																					.	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.				.	350	.	.	.	.	.	.	.	.	.	360	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions