Job Description P69856 Confidence 49.02% Date Thu Jan 5 12:12:14 GMT 2012 Rank 44 Aligned Residues 145 % Identity 15% Template d2gufa1 SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 1.95

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		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I
Query Conservation
Alig confidence																																																															.	.
Template Conservation																																																															.	.
Template Sequence		S	G	Y	R	N	D	V	S	D	L	I	D	Y	D	D	H	T	L	K	Y	Y	N	E	G	K	A	R	I	K	G	V	E	A	T	A	N	F	D	T	G	P	L	T	H	T	V	S	Y	D	Y	V	D	A	R	N	A	I	T	D	T	P	.	.	L	L	R	R	A	K	Q	Q	V	K	Y	Q	L	D	W	Q	L
Template Known Secondary structure																T	T	T	T																						T	T															T	T	T			B	.	.		T	T			S
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.			.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.																							.
Query SS confidence																																.	.	.	.	.	.																							.
Query Sequence		N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	K	W	A	T	E	.	.	.	.	.	.	N	A	F	V	L	Q	Y	H	M	T	P	D	I	T	P	Y	I	E	Y	D	Y	L	.	D	R	Q	G	V	Y	N	G	R	D	N	L	S	E	N	S	Y	R	I	G	V
Query Conservation																																.	.	.	.	.	.																							.
Alig confidence			.																													.	.	.	.	.	.																							.					.	.	.	.	.	.	.	.
Template Conservation			.																																																														.	.	.	.	.	.	.	.
Template Sequence		Y	.	D	F	D	W	G	I	T	Y	Q	Y	L	G	T	R	Y	D	K	D	Y	S	S	Y	P	Y	Q	T	V	K	M	G	G	V	S	L	W	D	L	A	V	A	Y	P	V	T	S	H	L	T	V	R	G	K	I	A	N	L	F	D	K	D	Y	.	.	.	.	.	.	.	.	A	G	R	E	Y	T	L	S	G
Template Known Secondary structure		T	.	T																			S	S	S	S																				S	S	S	S									S	T	T					.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.																																																														.	.	.	.	.	.	.	.
Template SS confidence
		512		.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.									.	.	.	.	.	.	580	.	.
		235	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Y	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		591	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions