Job Description P69856 Confidence 44.94% Date Thu Jan 5 12:12:14 GMT 2012 Rank 46 Aligned Residues 93 % Identity 14% Template d1by5a_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.60

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.														.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Query Sequence		V	Q	V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A	T	.	.	.	.	K	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.												.	.
Template Conservation																																																																									.	.
Template Sequence		R	G	V	E	I	E	A	K	R	P	L	S	A	S	V	N	V	V	G	S	Y	T	Y	T	D	A	E	Y	T	T	D	T	T	Y	K	G	N	T	P	A	Q	V	P	K	H	M	A	S	L	W	A	D	Y	T	F	F	D	G	P	L	S	G	L	T	L	G	T	G	G	R	Y	.	.	T	G	S	S	Y	G	D
Template Known Secondary structure												S	S	S	S																		T	T	T	T	T				T	T			S													S	S	T	T	T	T										.	.						S	S
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.			.	640	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.
Predicted Secondary structure																									.	.	.	.
Query SS confidence																									.	.	.	.
Query Sequence		L	S	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	.	.	.	.	D	F	T	F	A	W	Q	T	T
Query Conservation																									.	.	.	.
Alig confidence																									.	.	.	.
Template Conservation
Template Sequence		P	A	N	S	F	K	V	G	S	Y	T	V	V	D	A	L	V	R	Y	D	L	A	R	V	G	M	A	G	S	N	V	A	L	H	V	N
Template Known Secondary structure		T	T			S																T	T	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions