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Job DescriptionP69856
Confidence96.35%DateThu Jan 5 12:12:14 GMT 2012
Rank13Aligned Residues159
% Identity9%Templatec3qq2C_
PDB info PDB header:membrane protein/protein transportChain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60....... ..70.........80.........90..
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Query Sequence  ATLDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHD. . . . . . . . . . . NKKENAALNDVQVEVNYAIKLDDQW
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Template Sequence  ADRTYPGDGGGKVKGLHVGGYAAYVGDGGYYLDTVLRLGRYDQQYNIAGTDGGRVTADYRTSGAAWSLEGGRRFELPNDW
Template Known Secondary structure  BTTTB

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   801........810.........820.........830.........840.........850.........860.........870.........880
 
   93......100....... ..110.........120... ......130.........140.......
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Query Sequence  TVRPGMLTHFSSNGT. . . . . . . . . . . . . . . . . . . RYGPYVKLSWDATKDL. . . . . . NFGIRYRYDWKAYRQQDLSGDMSR
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Template Sequence  FAEPQAEVMLWRTSGKRYRASNGLRVKVDANTATLGRLGLRFGRRIALAGGNIVQPYARLGWTQEFKS. . . . . . . . . TGR
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   881........890.........900.........910.........920.........930.........940........ .950.
 
   148.150.........160.........170.........180.........190........
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Query Sequence  DNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQY
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Template Sequence  HGRVELGAGVDAALGKGHNLYASYEYAA. . . . . . . GDRINIPWSFHAGYRY
Template Known Secondary structure  B


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   965....970.........980.........990.. .......1000........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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