Job Description P69856 Confidence 85.66% Date Thu Jan 5 12:12:14 GMT 2012 Rank 31 Aligned Residues 184 % Identity 10% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.										.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.
Query Sequence		W	Q	N	G	W	W	A	S	M	E	S	N	T	W	N	T	I	H	D	N	K	K	E	N	A	A	L	N	D	V	Q	V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	G	T	.	.	.	.	.	.	.	.	.	R	Y	G	P	Y	V	K	L	S	W	D	A
Query Conservation																																																													.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.																											.																		.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.																											.
Template Sequence		L	V	D	G	L	S	F	G	I	Q	Y	Q	.	.	.	G	K	N	Q	D	N	H	S	I	N	S	Q	N	G	D	G	V	G	Y	T	X	A	Y	E	F	D	.	G	F	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	Q	D	R	D	G	N	G	D	R	A	E	S	R	A	V	G	A	K	Y	D	A
Template Known Secondary structure		S		S	S									.	.	.			B		S	S	S		G	G	G		B		S											T	.	T														S	T	T	S	S	S	S	S			S
Template Predicted Secondary structure														.	.	.																											.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		T	K	D	L	N	F	G	I	R	Y	R	Y	.	.	D	W	K	A	Y	R	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	K	W	A	T	E	N	A	F	V	L	Q
Query Conservation														.	.
Alig confidence				.										.	.
Template Conservation				.
Template Sequence		N	N	.	V	Y	L	A	A	V	Y	A	E	T	R	N	X	S	I	V	E	N	T	V	T	D	T	V	E	X	A	N	K	T	Q	N	L	E	V	V	A	Q	Y	Q	F	D	F	G	L	R	P	A	I	S	Y	V	Q	S	K	G	K	Q	L	N	G	A	G	G	S	A	D	L	A	K	Y	I	Q	A	G	A	T
Template Known Secondary structure		T	T	.											S	S							T	T	T							S														T	T	S														S		T	T	T	T	S
Template Predicted Secondary structure				.
Template SS confidence
		221	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		Y	H	M	T	P	D	I	T	P	Y	I	E	Y	D	Y	L	D	R	Q	G	V	Y	N	G	R	D	.	N	L	S	E	N	S	Y	R	I	G	V	S	F	K
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		Y	Y	F	N	K	N	X	N	V	W	V	D	Y	R	F	N	L	L	D	E	N	D	Y	S	S	S	Y	V	G	T	D	D	Q	A	A	V	G	I	T	Y	Q
Template Known Secondary structure						S	S																S	S		T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions