Job Description P69856 Confidence 59.17% Date Thu Jan 5 12:12:14 GMT 2012 Rank 39 Aligned Residues 145 % Identity 12% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

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		43	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	V	S	E	G	W	Q	.	.	.	N	G	W	W	A	S	M	E	S	N	T	W	N	T	I	H	D	N	K	K	E	N	A	A	L	N	D	V	Q	V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	G	T	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.																																					.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.
Template Sequence		I	N	L	I	H	S	Q	P	L	G	D	W	T	L	G	A	N	L	G	F	F	Y	G	K	E	D	G	S	A	R	A	G	D	M	E	N	R	T	W	S	G	L	F	S	A	K	Y	.	.	.	G	G	N	T	F	Y	V	G	L	Q	K	L	T	G	D	S	A	W	M	R	V	N	G	T	S	G	G	T	L	A
Template Known Secondary structure											S	S																T	T		T	T																	.	.	.	T	T													S	S					B	T	T				T	T	S	T
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
														108	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																																											.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																																											.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	R	Y	G	P	Y	V	K	L	S	W	D	A	T	.	.	.	.	K	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	.	.	.	.	S	D	F	T	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																																											.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																		.	.	.	.	.																					.	.	.	.
Template Conservation																																																.	.	.	.	.
Template Sequence		N	D	S	Y	N	A	S	Y	D	N	A	K	E	K	S	W	Q	V	R	H	D	Y	N	F	A	A	L	G	V	P	G	L	T	L	M	N	R	Y	I	S	G	S	N	V	H	T	.	.	.	.	.	A	T	V	S	D	G	K	E	W	G	R	E	S	E	V	A	Y	T	V	Q	S	G	T	L	K	N	L	N	L
Template Known Secondary structure		T			S	S					S	T	T												T	T	T	T	T		T	T																.	.	.	.	.	T	T																			S	S	S	S	T	T
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.						.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	K	W	A	T	E	N	A	F	V	L	Q	Y	H	M	T
Query Conservation
Alig confidence												.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.
Template Sequence		K	W	R	N	S	T	M	R	R	D	.	.	.	.	.	.	F	S	N	N	E	F	D	E	N	R	L	I	I	S	Y	P	L	S
Template Known Secondary structure											S	.	.	.	.	.	.	S		S
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400							.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions